Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq96840 98.7 8e-16 >seq96840 Length=69834 Score = 98.7 bits (108), Expect = 8e-16 Identities = 134/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 108764 TGAGGTACGCCCTCACCCTCAACTTTACGTGGCTGGTCAATTCGGCGGCGCACATGTACG 108823 || ||||| |||| ||| ||| ||||||||| || || || |||||||||| | Sbjct 55633 TGCGGTACTGCCTCGTCCTTAACGCTACGTGGCTCGTGAACAGCGCCGCGCACATGTGGG 55574 Query 108824 GCGACCGTCCGTTCGACAAGAACATTTTCCCAAGAGAAAACAAATTGGTGGCGGCGTTGG 108883 || ||| |||| ||| ||||| || || ||| || ||| || |||| | Sbjct 55573 GCTACCACCCGTACGATCGCAACATCAGACCGGCGGAGAACGCGTTCGTGTCGACGTTCG 55514 Query 108884 CTCTCGGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGACTACAAGGCCGCCG 108943 | | |||||||| ||||||||||| ||||||||||||||| |||||||| ||| || Sbjct 55513 CGATTGGCGAGGGCTGGCACAACTATCACCACGTGTTCCCCAACGACTACCGCACCGGCG 55454 Query 108944 AGTTGGG 108950 |||| || Sbjct 55453 AGTTCGG 55447 Score = 87.8 bits (96), Expect = 1e-12 Identities = 133/188 (71%), Gaps = 1/188 (1%) Strand=Plus/Minus Query 108764 TGAGGTACGCCCTCACCCTCAACTTTACGTGGCTGGTCAATTCGGCGGCGCACATGTACG 108823 || ||||| |||| ||| ||| ||||||||| || || || |||||||||| | Sbjct 54522 TGCGGTACTGCCTCGTCCTTAACGCTACGTGGCTCGTGAACAGCGCCGCGCACATGTGGG 54463 Query 108824 GCGACCGTCCGTT-CGACAAGAACATTTTCCCAAGAGAAAACAAATTGGTGGCGGCGTTG 108882 || ||| ||| | ||| ||||| || || ||| || ||| || |||| Sbjct 54462 GCTACCACCCGGTACGATCGCAACATCAGACCGGCGGAGAACGCGTTCGTGTCGACGTTC 54403 Query 108883 GCTCTCGGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGACTACAAGGCCGCC 108942 || | |||||||| ||||||||||| |||||||||||||| |||||||| ||| | Sbjct 54402 GCGATTGGCGAGGGCTGGCACAACTATCACCACGTGTTCCCAAACGACTACCGCACCGGC 54343 Query 108943 GAGTTGGG 108950 ||||| || Sbjct 54342 GAGTTCGG 54335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 378808600375224