Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq34585 100 3e-16 seq364598 91.5 1e-13 seq496440 86.0 6e-12 seq320776 86.0 6e-12 >seq34585 Length=75490 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | ||| | ||| | ||| | | ||||| || |||||||||||||| Sbjct 7951 GCCACCACGGAGACGGAGAACAAGATGGAGAGTGGACTCTTTCTGAATGTTGTAGTCAGA 7892 Query 138447 CATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAG 138505 | || | || | |||||||| || || || | |||| |||||||| || || || | Sbjct 7891 TAGGGTTCTGCCA-TCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCTGGTG 7833 Query 138506 GTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 | ||||| |||||||| ||| ||| |||| | ||| | ||||| ||| ||||| Sbjct 7832 GGATACCCTCTTTGTCTTGGATCTTTGCCTTTACATTTTCAATAGTGTCACTCGGCTCCA 7773 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | |||||||| || || || || || || |||||||| Sbjct 7772 CCTCCAATGTGATGGTTTTACCGGTGAGGGTCTTGACGAAGATCTGCAT 7724 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||| || || ||||||||||| || ||||| ||||||||| || || || | Sbjct 7461 GACTCTTTCTGGATGTTGTAGTCTGACAGGGTACGGCCGTCCTCGAGCTGCTTTCCAGCG 7402 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| || || || || ||||| || ||||| ||| ||| |||| Sbjct 7401 AAGATGAGACGCTGCTGATCTGGTGGGATACCCTCCTTGTCCTGGATCTTTGCCTTTACA 7342 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | ||| | ||||| | | ||||||||| | || | ||||| ||||| || || || Sbjct 7341 TTTTCAATAGTGTCACTTGGCTCCACCTCCAGAGTGATGGTTTTGCCAGTTAGCGTCTTC 7282 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 7281 ACGAAGATCTGCAT 7268 >seq364598 Length=45638 Score = 91.5 bits (100), Expect = 1e-13 Identities = 119/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 153303 GCCAGTTCGCAGCTAGCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTG 153362 |||||||||||||| |||| | |||| ||||||| ||||| || ||| || | ||| Sbjct 2040 GCCAGTTCGCAGCTGGCCTTCAACGCGGCATAGTAGATGGTCTCAAAGATCTGGATGTTG 1981 Query 153363 AGAACGGCCGCTTCTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGA 153422 || || || ||||||| |||| | ||||| || | ||||| || |||||| Sbjct 1980 AGTTTCTTGGCCTCGGGGCTCTCGAACGGGAAGCGCATCAAGATGAAGGCATCCGCCAGA 1921 Query 153423 CCCTGGATACCGACGCCGATGGGTCGATGCTTCTCGTTGCTGCGC 153467 ||||||| |||| |||||||| || || | |||||||||| Sbjct 1920 CCCTGGACGCCGATACCGATGGGGCGGTGTCGCATGTTGCTGCGC 1876 >seq496440 Length=42271 Score = 86.0 bits (94), Expect = 6e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 52764 AATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAG 52823 ||||||||||| || ||| | ||||| ||| | || |||||| ||||||| ||||||||| Sbjct 15228 AATCCGTTTGACTTCATGGAGAACATCTCGTTGGAAGGCAAGTCCAACTTCTTCGAGAAG 15169 Query 52824 CGAGTCGGCGAGTATAAGCG 52843 || ||||||||||| |||| Sbjct 15168 CGGGTCGGCGAGTACCAGCG 15149 >seq320776 Length=21916 Score = 86.0 bits (94), Expect = 6e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 52764 AATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAG 52823 ||||||||||| || ||| | ||||| ||| | || |||||| ||||||| ||||||||| Sbjct 9886 AATCCGTTTGACTTCATGGAGAACATCTCGTTGGAAGGCAAGTCCAACTTCTTCGAGAAG 9827 Query 52824 CGAGTCGGCGAGTATAAGCG 52843 || ||||||||||| |||| Sbjct 9826 CGGGTCGGCGAGTACCAGCG 9807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 492310470207120