Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq34585 87.8 1e-12 >seq34585 Length=75490 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 14949 GCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCT 15008 |||||| || | | | ||| | ||| || || || ||||| || |||||||| || Sbjct 7951 GCCACCACGGAGACGGAGAACAAGATGGAGAGTGGACTCTTTCTGAATGTTGTAGTCAGA 7892 Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 || |||| | || || | || ||||||||| | || | |||||| || || ||| Sbjct 7891 TAGGGTTCTGCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCTGGTGG 7832 Query 15069 AATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 || || || ||||| || ||||| ||| ||| |||| ||||| || || || | Sbjct 7831 GATACCCTCTTTGTCTTGGATCTTTGCCTTT-ACATTTTCAATAGTGTCACTCGGCTCCA 7773 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || || || ||||||||||| || || || || || || || |||||| Sbjct 7772 CCTCCAATGTGATGGTTTTACCGGTGAGGGTCTTGACGAAGATCTGCATA 7723 Score = 86.0 bits (94), Expect = 4e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 || || | |||||| || || || || || || ||||| || ||| | | | || Sbjct 6795 AACACAAGATGAAGTGTTGACTCCTTCTGGATATTGTAGTCAGACAGAGTGCGGCCATCC 6736 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || | || ||||||||| | || | ||||| || || ||| || ||||||||||| Sbjct 6735 TCAAGCTGCTTGCCAGCGAAGATGAGTCGCTGCTGATCAGGTGGGATACCTTCCTTGTCC 6676 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 || ||| || ||| |||| || ||||| ||| ||| || || | || ||||| Sbjct 6675 TGGATCTTGGCCTTCACATTTTCAATGGTATCACTAGGTTCGACCTCAAGTGTGATGGTC 6616 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || |||||||| ||||| || ||||| Sbjct 6615 TTGCCAGTGAGAGTTTTCACAAAGATCTGCAT 6584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354617100289235