Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq34585 123 2e-23 seq251981 111 1e-19 seq364598 102 8e-17 >seq34585 Length=75490 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||||||| | ||| | || ||||| || || |||||||| || | Sbjct 6810 CCACCACGGAGACGCAACACAAGATGAAGTGTTGACTCCTTCTGGATATTGTAGTCAGAC 6751 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| || |||||| |||| | |||||||||||| || || Sbjct 6750 AGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGTCGCTGCTGATCAGGTGGG 6691 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || ||||||||| ||| || ||| | | ||| | ||| || || ||||| Sbjct 6690 ATACCTTCCTTGTCCTGGATCTTGGCCTTCACATTTTCAATGGTATCACTAGGTTCGACC 6631 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | || | || ||||| || |||||||| ||||| ||||||||| Sbjct 6630 TCAAGTGTGATGGTCTTGCCAGTGAGAGTTTTCACAAAGATCTGCATG 6583 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||| | ||| | ||||||||||| || || ||||| || | Sbjct 7494 CCACCACGGAGACGAAGCACAAGATGAAGAGTAGACTCTTTCTGGATGTTGTAGTCTGAC 7435 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || ||||| ||||||||| |||| | ||||||||||| || || Sbjct 7434 AGGGTACGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCTGGTGGG 7375 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||||||| ||| || ||| | | ||| | ||||| | ||| || Sbjct 7374 ATACCCTCCTTGTCCTGGATCTTTGCCTTTACATTTTCAATAGTGTCACTTGGCTCCACC 7315 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | |||||||| || || || || || || |||||||| Sbjct 7314 TCCAGAGTGATGGTTTTGCCAGTTAGCGTCTTCACGAAGATCTGCAT 7268 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||||||| | ||| | || ||||| || || |||||||| || | Sbjct 7722 CCACCACGGAGACGCAACACGAGATGAAGAGTCGACTCCTTCTGGATATTGTAGTCTGAC 7663 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || ||||| ||||| || |||| | ||||||||||| || || Sbjct 7662 AGGGTACGGCCGTCCTCGAGCTGCTTTCCTGCAAAGATGAGACGCTGCTGATCTGGCGGG 7603 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || ||||||||| ||| || ||| || | | ||||| ||| || | ||| || Sbjct 7602 ATACCTTCCTTGTCCTGGATCTT-TGCTTTCACATTTTCGATGGTATCACTGGGCTCTAC 7544 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || ||||| || || || || ||||| |||||||| Sbjct 7543 CTCTAATGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 7496 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||||||| | ||| | || || || || || |||||||| || | Sbjct 7038 CCACCACGGAGACGCAACACAAGATGAAGAGTTGATTCCTTCTGGATATTGTAGTCTGAC 6979 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || ||||| |||||||| |||| | ||||||||||| || || Sbjct 6978 AGGGTACGGCCGTCCTCGAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGATCTGGTGGG 6919 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || ||||||||| ||| || ||| || | | ||||| ||| || | ||| || Sbjct 6918 ATACCTTCCTTGTCCTGGATCTT-TGCTTTCACGTTTTCGATGGTATCGCTGGGCTCTAC 6860 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || ||||| || || || || || || |||||||| Sbjct 6859 CTCTAGTGTGATGGTCTTGCCAGTGAGCGTCTTCACGAAGATCTGCAT 6812 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||| | ||| | || ||||| || || |||||||| || | Sbjct 7266 CCACCACGGAGACGAAGCACAAGATGAAGAGTTGACTCCTTCTGGATATTGTAGTCTGAC 7207 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || ||||| ||||||||| |||| | ||||||||||| || || Sbjct 7206 AGGGTACGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCTGGTGGG 7147 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || ||||| ||||| ||| || ||| | | ||| | ||||| | ||| || Sbjct 7146 ATACCCTCTTTGTCTTGGATCTTTGCCTTTACATTTTCAATAGTGTCACTTGGCTCCACC 7087 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | |||||||| || || || || || || |||||||| Sbjct 7086 TCAAGAGTGATGGTTTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 7040 >seq251981 Length=36728 Score = 111 bits (122), Expect = 1e-19 Identities = 123/164 (75%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 146044 AGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGA 146103 ||| |||| | ||||| | |||| || | ||| ||||| || | ||| |||||||| Sbjct 17334 AGGTCCTTCAGGAGATGCGGGTTCACAATCTGGAACTCTCCCGAGAGGACGCGCCTGGTG 17393 Query 146104 TACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTA 146163 || | |||||||||| ||||||||| ||||||||||| ||||| ||||| ||||| | Sbjct 17394 TAGATGTTGCTGGTGTACGGCTCGATGGACTCGTTGTTGCCGAGGATCTGGGCCGTGGAG 17453 Query 146164 GCGGTAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTG 146207 ||||| |||||| |||| |||| | ||| | | |||||| Sbjct 17454 GCGGTCGGCATGGGAGCCAGGAGCAGACTGTTGCGGAGGCCGTG 17497 >seq364598 Length=45638 Score = 102 bits (112), Expect = 8e-17 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 146044 AGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGA 146103 ||| |||| | ||||| |||| || | ||| ||||| || | ||| |||||||| Sbjct 3356 AGGTCCTTCAGGAGATGAGGGTTCACGATCTGGAACTCTCCCGAGAGGACGCGCCTGGTG 3297 Query 146104 TACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTA 146163 || | |||||||||| ||||||||| ||||||||||| || || ||||| || || | | Sbjct 3296 TAGATGTTGCTGGTGTACGGCTCGATAGACTCGTTGTTGCCAAGGATCTGGGCAGTGGAA 3237 Query 146164 GCGGTAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTG 146207 ||||| |||||| |||| |||| | ||| | | |||||| Sbjct 3236 GCGGTCGGCATGGGAGCCAGGAGCAGACTGTTGCGGAGGCCGTG 3193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471714202873040