Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq251981 118 1e-21 seq364598 96.9 4e-15 seq407716 95.1 1e-14 seq620319 93.3 5e-14 >seq251981 Length=36728 Score = 118 bits (130), Expect = 1e-21 Identities = 166/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 115809 CTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCACGAGGTGCTTATTGAC 115868 |||||| ||| ||||| || |||| | | | || |||| || ||| ||| || || Sbjct 17300 CTTCATTTCCGGGGACCACAGGCCAAGATCCGTCAGGTCCTTCAGGAGATGCGGGTTCAC 17359 Query 115869 AACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAA 115928 || ||||| |||| |||| ||| || ||||||||| | ||||| ||||| | Sbjct 17360 AATCTGGAACTCTCCCGAGAGGACGCGCCTGGTGTAGATGTTGCTGGTGTACGGCTCGAT 17419 Query 115929 GCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAG 115988 | |||| ||||| || | ||| ||||| |||||||| || |||||||| |||| ||| || Sbjct 17420 GGACTCGTTGTTGCCGAGGATCTGGGCCGTGGAGGCGGTCGGCATGGGAGCCAGGAGCAG 17479 Query 115989 GCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGT 116041 ||||||||||| || | | |||| |||| || || ||||||||| Sbjct 17480 ACTGTTGCGGAGGCCGTGCTTCGCAATGTCGGCCTTCAGAGCCGCCCAGTCGT 17532 >seq364598 Length=45638 Score = 96.9 bits (106), Expect = 4e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 115876 AACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCA 115935 ||||| |||| |||| ||| || ||||||||| | ||||| ||||| | |||| Sbjct 3323 AACTCTCCCGAGAGGACGCGCCTGGTGTAGATGTTGCTGGTGTACGGCTCGATAGACTCG 3264 Query 115936 TTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTG 115995 ||||| || | ||| ||||| ||||| || || |||||||| |||| ||| || |||||| Sbjct 3263 TTGTTGCCAAGGATCTGGGCAGTGGAAGCGGTCGGCATGGGAGCCAGGAGCAGACTGTTG 3204 Query 115996 CGGAGACC 116003 ||||| || Sbjct 3203 CGGAGGCC 3196 >seq407716 Length=13296 Score = 95.1 bits (104), Expect = 1e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598 ||||||| | | ||| ||||| || |||||| || || ||||| || |||| ||||| Sbjct 4584 CCTCGTCTCTGCTGATAAGTTCGTTGGAGAAGGTGAGTCCAGGCATTAGTCCCCTCTTCT 4643 Query 127599 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACA 127648 |||||||||| || ||| ||| ||||| ||||||||||| ||||| ||| Sbjct 4644 TCAACCAGAAGATGGCAGCAAAGGAGCCTGAGAAGAAGATTCCCTCTACA 4693 >seq620319 Length=78974 Score = 93.3 bits (102), Expect = 5e-14 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598 ||||||| | | ||| ||||| || |||||| || || ||||| || |||| |||| Sbjct 15680 CCTCGTCTCTGCTGATAAGTTCGTTGGAGAAGGTGAGTCCGGGCATTAGTCCCCTTTTCT 15621 Query 127599 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 127647 |||||||||| || ||| ||| ||||||||||||||||| ||||| || Sbjct 15620 TCAACCAGAAGATGGCAGCAAAGGAGCCAGAGAAGAAGATTCCCTCTAC 15572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608621604432360