Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq364598 120 5e-22 seq251981 120 5e-22 >seq364598 Length=45638 Score = 120 bits (132), Expect = 5e-22 Identities = 173/244 (71%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 204165 TCAGCTCCCGCACCAGGTGGGGGTTGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGG 204224 |||| ||| || || || ||||| | |||||| || ||||| || || || | | || Sbjct 3358 TCAGGTCCTTCAGGAGATGAGGGTTCACGATCTGGAACTCTCCCGAGAGGACGCGCCTGG 3299 Query 204225 TGAACAGGTTGTTGGTGAATGGTTCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGC 204284 || | | |||| ||||| | || |||| | |||||||||||| | ||||| || ||| Sbjct 3298 TGTAGATGTTGCTGGTGTACGGCTCGATAGACTCGTTGTTGCCAAGGATCTGGGCAGTGG 3239 Query 204285 TGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTTGCGCACACCGTATTTTTGGACCCTGC 204344 || || |||||||||||||||||||| |||||| | |||| || || | Sbjct 3238 AAGCGGTCGGCATGGGAGCCAGGAGCAGACTGTTGCGGAGGCCGTGCTTGGCGATGTCGG 3179 Query 204345 GCTTCAGAGAGGTCCAGTCGTGCATCGCACTGGGTTTCACGCCCCACATGTCGAACTGAA 204404 |||||| | | ||||||||| | | |||| | ||||||||||||||| |||| | Sbjct 3178 CCTTCAGCGCCGCCCAGTCGTGGAGGTCGGTGGGCGTGACGCCCCACATGTCGTACTGCA 3119 Query 204405 AGAT 204408 | || Sbjct 3118 AAAT 3115 Score = 107 bits (118), Expect = 3e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 203929 GTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCT 203988 ||||||| | |||||||| |||||| || || ||||||||||| || ||||| || Sbjct 4357 GTGCATGCTGGTCAGTTTGCCATAGTTGGGCTCAGCTATGTGAATGTTGAGGGACTGACT 4298 Query 203989 TTGGTCGATGAAAGGCGCCCGATCTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTC 204048 ||||||||| | | | |||| || |||||| | ||| | ||||||||| || ||||| Sbjct 4297 CTGGTCGATGTACGCCCCCCGGTCAATGGCCATCTGGATCACGGTCTTCTGGGAGATCTC 4238 Query 204049 CCACACCGTCTTGAACA 204065 |||||| |||||| ||| Sbjct 4237 CCACACGGTCTTGTACA 4221 >seq251981 Length=36728 Score = 120 bits (132), Expect = 5e-22 Identities = 173/244 (71%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 204165 TCAGCTCCCGCACCAGGTGGGGGTTGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGG 204224 |||| ||| || || || ||||| | ||||| || ||||| || || || | | || Sbjct 17332 TCAGGTCCTTCAGGAGATGCGGGTTCACAATCTGGAACTCTCCCGAGAGGACGCGCCTGG 17391 Query 204225 TGAACAGGTTGTTGGTGAATGGTTCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGC 204284 || | | |||| ||||| | || |||| | |||||||||||||| ||||| || ||| Sbjct 17392 TGTAGATGTTGCTGGTGTACGGCTCGATGGACTCGTTGTTGCCGAGGATCTGGGCCGTGG 17451 Query 204285 TGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTTGCGCACACCGTATTTTTGGACCCTGC 204344 ||| || |||||||||||||||||||| |||||| | |||| || | | Sbjct 17452 AGGCGGTCGGCATGGGAGCCAGGAGCAGACTGTTGCGGAGGCCGTGCTTCGCAATGTCGG 17511 Query 204345 GCTTCAGAGAGGTCCAGTCGTGCATCGCACTGGGTTTCACGCCCCACATGTCGAACTGAA 204404 |||||||| | ||||||||| | | |||| | || |||||||||||| |||| | Sbjct 17512 CCTTCAGAGCCGCCCAGTCGTGGAGGTCGGTGGGCGTGACACCCCACATGTCGTACTGCA 17571 Query 204405 AGAT 204408 | || Sbjct 17572 AAAT 17575 Score = 105 bits (116), Expect = 1e-17 Identities = 103/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 203929 GTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCT 203988 ||||||| | |||||||| |||||| ||||| ||||| ||||| || |||||||| Sbjct 15308 GTGCATGCTGGTCAGTTTGCCATAGTTGGGCTCGGCTATGTGGATGTTGAGGGACTGGCT 15367 Query 203989 TTGGTCGATGAAAGGCGCCCGATCTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTC 204048 ||||||||| | | | |||| || |||||| | ||| | |||||||| || ||||| Sbjct 15368 CTGGTCGATGTACGCCCCCCGGTCAATGGCCATCTGGATCACAGTCTTCTGGGAGATCTC 15427 Query 204049 CCACACCGTCTTG 204061 |||||| |||||| Sbjct 15428 CCACACGGTCTTG 15440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 788823071019760