Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq34585 138 3e-27 seq133437 120 7e-22 seq269770 109 1e-18 seq156656 109 1e-18 >seq34585 Length=75490 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 199421 ACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCC 199480 ||||| || || || |||||||| |||| |||||||||| || ||| | ||||| || Sbjct 6792 ACAAGATGAAGTGTTGACTCCTTCTGGATATTGTAGTCAGACAGAGTGCGGCCATCCTCA 6733 Query 199481 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGA 199540 |||||||| || ||||||||||| |||||||| || || || ||||| ||||| Sbjct 6732 AGCTGCTTGCCAGCGAAGATGAGTCGCTGCTGATCAGGTGGGATACCTTCCTTGTCCTGG 6673 Query 199541 ATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTA 199600 ||||| |||||| ||| | ||| || | | ||| || || | ||||| ||||| Sbjct 6672 ATCTTGGCCTTCACATTTTCAATGGTATCACTAGGTTCGACCTCAAGTGTGATGGTCTTG 6613 Query 199601 CCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||||||||||||||| || || Sbjct 6612 CCAGTGAGAGTTTTCACAAAGATCTG 6587 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 199421 ACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCC 199480 || || || |||||||||||||| |||| |||||||| | || || | || || || Sbjct 7704 ACGAGATGAAGAGTCGACTCCTTCTGGATATTGTAGTCTGACAGGGTACGGCCGTCCTCG 7645 Query 199481 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGA 199540 ||||||||||| || ||||||||||||||||| || || || ||||| ||||| Sbjct 7644 AGCTGCTTTCCTGCAAAGATGAGACGCTGCTGATCTGGCGGGATACCTTCCTTGTCCTGG 7585 Query 199541 ATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTA 199600 |||||| ||||| ||||| ||| || | | ||||| || || ||||| ||||| Sbjct 7584 ATCTTTGCTTTCACATTTTCGATGGTATCACTGGGCTCTACCTCTAATGTGATGGTCTTG 7525 Query 199601 CCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| || |||||||| || || Sbjct 7524 CCAGTGAGGGTCTTCACAAAGATCTG 7499 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||| |||||||| ||||| || || | ||||||||||| | || || ||||| Sbjct 7935 AGAACAAGATGGAGAGTGGACTCTTTCTGAATGTTGTAGTCAGATAGGGTTCTGCCATCC 7876 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || |||||||||||||||||||| || || || || ||| || Sbjct 7875 TCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCTGGTGGGATACCCTCTTTGTCT 7816 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || |||||| ||| || ||| | ||||| | | || || ||||| ||||| || Sbjct 7815 TGGATCTTTGCCTTTACATTTTCAATAGTGTCACTCGGCTCCACCTCCAATGTGATGGTT 7756 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || || || || || Sbjct 7755 TTACCGGTGAGGGTCTTGACGAAGATCTG 7727 Score = 123 bits (136), Expect = 6e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 199421 ACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCC 199480 ||||| || ||||| || ||||| |||| |||||||| | || || | || || || Sbjct 7020 ACAAGATGAAGAGTTGATTCCTTCTGGATATTGTAGTCTGACAGGGTACGGCCGTCCTCG 6961 Query 199481 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGA 199540 ||||||||||| || ||||||||||||||||| || || || ||||| ||||| Sbjct 6960 AGCTGCTTTCCAGCAAAGATGAGACGCTGCTGATCTGGTGGGATACCTTCCTTGTCCTGG 6901 Query 199541 ATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTA 199600 |||||| |||||| ||||| ||| || | | ||||| || | ||||| ||||| Sbjct 6900 ATCTTTGCTTTCACGTTTTCGATGGTATCGCTGGGCTCTACCTCTAGTGTGATGGTCTTG 6841 Query 199601 CCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| || ||||| || || || Sbjct 6840 CCAGTGAGCGTCTTCACGAAGATCTG 6815 Score = 116 bits (128), Expect = 9e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||| || ||||| ||||| || |||| ||||||||| | || || | || || Sbjct 7479 AGCACAAGATGAAGAGTAGACTCTTTCTGGATGTTGTAGTCTGACAGGGTACGGCCGTCC 7420 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || ||||||||||| |||||||||||||||||||| || || || || || ||| Sbjct 7419 TCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCTGGTGGGATACCCTCCTTGTCC 7360 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || |||||| ||| || ||| | ||||| ||| || || |||| ||||| || Sbjct 7359 TGGATCTTTGCCTTTACATTTTCAATAGTGTCACTTGGCTCCACCTCCAGAGTGATGGTT 7300 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || ||||| || || || Sbjct 7299 TTGCCAGTTAGCGTCTTCACGAAGATCTG 7271 Score = 111 bits (122), Expect = 4e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||| || ||||| |||||||| |||| |||||||| | || || | || || Sbjct 7251 AGCACAAGATGAAGAGTTGACTCCTTCTGGATATTGTAGTCTGACAGGGTACGGCCGTCC 7192 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || ||||||||||| |||||||||||||||||||| || || || || ||| || Sbjct 7191 TCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCTGGTGGGATACCCTCTTTGTCT 7132 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || |||||| ||| || ||| | ||||| ||| || || || | ||||| || Sbjct 7131 TGGATCTTTGCCTTTACATTTTCAATAGTGTCACTTGGCTCCACCTCAAGAGTGATGGTT 7072 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || || || || || Sbjct 7071 TTGCCAGTGAGGGTCTTGACGAAGATCTG 7043 >seq133437 Length=111544 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||| |||||||| | ||| || || | ||||||||||| || || || ||||| Sbjct 106777 AGCACAAGATGGAGAGTGGTCTCTTTCTGAATGTTGTAGTCAGACAGGGTTCTGCCATCC 106718 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || |||||||||||||||||||| | || || || ||| || Sbjct 106717 TCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATGTGGTTGGATACCCTCTTCGTCT 106658 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || ||| | |||| ||| || || |||| ||||| || Sbjct 106657 TGGATCTTCGCCTTTACATTTTCAATAATGTCACTTGGCTCCACCTCCAGTGTGATGGTT 106598 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || || || ||||| Sbjct 106597 TTACCGGTGAGGGTCTTGACGAAGATTTG 106569 Score = 86.0 bits (94), Expect = 1e-11 Identities = 96/126 (76%), Gaps = 2/126 (2%) Strand=Plus/Minus Query 199421 ACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCC 199480 || || || ||||| ||||||||||||| |||||||| | || ||| | || || | Sbjct 105298 ACGAGATGAAGAGTTGACTCCTTTTGGATATTGTAGTCTGACATAGTACGGCCGTCCCCA 105239 Query 199481 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTC-CTTCTCGCTCCTG 199539 ||||||||||| || |||||||| |||||||| || || | || | |||| | ||||| Sbjct 105238 AGCTGCTTTCCAGCAAAGATGAGTCGCTGCTGATCAGGTAGGATACGTTTCTTG-TCCTG 105180 Query 199540 AATCTT 199545 ||||| Sbjct 105179 GATCTT 105174 >seq269770 Length=105173 Score = 109 bits (120), Expect = 1e-18 Identities = 96/120 (80%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || ||||| || || ||||| || |||||||| |||| ||||||||| | || || Sbjct 72021 CGGAGCCTCAGTACGAGATGGAGGGTTGACTCCTTCTGGATGTTGTAGTCTGACAGCGTG 71962 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||||||||||||||| || || ||||| |||||||||||||| ||| ||| ||| Sbjct 71961 CGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGAATGCCT 71902 >seq156656 Length=67780 Score = 109 bits (120), Expect = 1e-18 Identities = 96/120 (80%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || ||||| ||||| ||||| || |||||||| || | ||||||||| | || || Sbjct 29884 CGGAGCCTCAGTACAAGATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCTGACAGGGTG 29825 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||||||||||||||| || || ||||| |||||||||||||| ||| ||| ||| Sbjct 29824 CGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGAATGCCT 29765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1169298685228757