Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq34585 132 5e-26 seq133437 82.4 9e-11 >seq34585 Length=75490 Score = 132 bits (146), Expect = 5e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||||||| ||||| | ||| |||||| |||||||||||||| || |||||||| | Sbjct 6799 ACGCAACACAAGATGAAGTGTTGACTCCTTCTGGATATTGTAGTCAGACAGAGTGCGGCC 6740 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || ||||||||||| ||||| || | |||||||| || | || | | ||||| Sbjct 6739 ATCCTCAAGCTGCTTGCCAGCGAAGATGAGTCGCTGCTGATCAGGTGGGATACCTTCCTT 6680 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 |||| |||||| ||| | | | | || || || | ||| || || | ||||| Sbjct 6679 GTCCTGGATCTTGGCCTTCACATTTTCAATGGTATCACTAGGTTCGACCTCAAGTGTGAT 6620 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| ||||| || || ||||| |||||||| ||||| Sbjct 6619 GGTCTTGCCAGTGAGAGTTTTCACAAAGATCTGCAT 6584 Score = 123 bits (136), Expect = 3e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||| ||||| | ||| ||| || ||||| |||||||| || || || || | Sbjct 7483 ACGAAGCACAAGATGAAGAGTAGACTCTTTCTGGATGTTGTAGTCTGACAGGGTACGGCC 7424 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| ||||||||||| || ||||| || | |||||||| || | || | | |||||| Sbjct 7423 GTCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCTGGTGGGATACCCTCCTT 7364 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 |||| |||||| ||| | | | | ||||| || | ||||| |||| ||||| Sbjct 7363 GTCCTGGATCTTTGCCTTTACATTTTCAATAGTGTCACTTGGCTCCACCTCCAGAGTGAT 7304 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||||||| || ||||| || || ||||| ||||| Sbjct 7303 GGTTTTGCCAGTTAGCGTCTTCACGAAGATCTGCAT 7268 Score = 111 bits (122), Expect = 2e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||| ||||| | || |||||| |||||||||||||| || || || || | Sbjct 7255 ACGAAGCACAAGATGAAGAGTTGACTCCTTCTGGATATTGTAGTCTGACAGGGTACGGCC 7196 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| ||||||||||| || ||||| || | |||||||| || | || | | ||| || Sbjct 7195 GTCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCTGGTGGGATACCCTCTTT 7136 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 ||| |||||| ||| | | | | ||||| || | ||||| || | ||||| Sbjct 7135 GTCTTGGATCTTTGCCTTTACATTTTCAATAGTGTCACTTGGCTCCACCTCAAGAGTGAT 7076 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||||||| || || || || || ||||| ||||| Sbjct 7075 GGTTTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 7040 Score = 111 bits (122), Expect = 2e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||||||| ||||| | || |||||| |||||||||||||| || || || || | Sbjct 7711 ACGCAACACGAGATGAAGAGTCGACTCCTTCTGGATATTGTAGTCTGACAGGGTACGGCC 7652 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| ||||||||||| || || || || | |||||||| || | ||| | | ||||| Sbjct 7651 GTCCTCGAGCTGCTTTCCTGCAAAGATGAGACGCTGCTGATCTGGCGGGATACCTTCCTT 7592 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 |||| |||||| || | | | | || || || | || || || | ||||| Sbjct 7591 GTCCTGGATCTTTGCTTTCACATTTTCGATGGTATCACTGGGCTCTACCTCTAATGTGAT 7532 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| ||||| || || || || |||||||| ||||| Sbjct 7531 GGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 7496 Score = 109 bits (120), Expect = 6e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||||||| ||||| | || ||||| |||||||||||||| || || || || | Sbjct 7027 ACGCAACACAAGATGAAGAGTTGATTCCTTCTGGATATTGTAGTCTGACAGGGTACGGCC 6968 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| ||||||||||| || || || || | |||||||| || | || | | ||||| Sbjct 6967 GTCCTCGAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGATCTGGTGGGATACCTTCCTT 6908 Query 46498 GTCCATGATCTTCTTCTTGAGCG-TCGCCACCGTGTCGCTCGATTCCACATCCACCGTGA 46556 |||| |||||| | ||| || | | | || ||||| | || || || | |||| Sbjct 6907 GTCCTGGATCTT-TGCTTTCACGTTTTCGATGGTATCGCTGGGCTCTACCTCTAGTGTGA 6849 Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| ||||| || ||||| || || ||||| ||||| Sbjct 6848 TGGTCTTGCCAGTGAGCGTCTTCACGAAGATCTGCAT 6812 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || || || |||||||| ||||| || | | || |||||||||||||| ||||| Sbjct 7915 CTCTTTCTGAATGTTGTAGTCAGATAGGGTTCTGCCATCCTCGAGCTGCTTGCCAGCGAA 7856 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||| || | || | | ||| ||||| |||||| ||| | | Sbjct 7855 GATGAGACGCTGCTGATCTGGTGGGATACCCTCTTTGTCTTGGATCTTTGCCTTTACATT 7796 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | ||||| |||| ||||| |||| ||||||||||| || || || || || || Sbjct 7795 TTCAATAGTGTCACTCGGCTCCACCTCCAATGTGATGGTTTTACCGGTGAGGGTCTTGAC 7736 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 7735 GAAGATCTGCAT 7724 >seq133437 Length=111544 Score = 82.4 bits (90), Expect = 9e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||| ||||| | || |||| || || || |||||||| || || || | | || || Sbjct 106775 CACAAGATGGAGAGTGGTCTCTTTCTGAATGTTGTAGTCAGACAGGGTTCTGCCATCCTC 106716 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 ||||||||||| ||||| || | |||||||| | | | | | ||| | ||| Sbjct 106715 CAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATGTGGTTGGATACCCTCTTCGTCTTG 106656 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||||| ||| | | | | |||| || | ||||| |||| ||||||||||| Sbjct 106655 GATCTTCGCCTTTACATTTTCAATAATGTCACTTGGCTCCACCTCCAGTGTGATGGTTTT 106596 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || || || || ||||||||||| Sbjct 106595 ACCGGTGAGGGTCTTGACGAAGATTTGCAT 106566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560737187590920