Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq250674 140 3e-28 seq407716 127 2e-24 seq34585 114 1e-20 seq620319 113 4e-20 seq496440 93.3 4e-14 seq320776 91.5 1e-13 seq133437 89.7 5e-13 >seq250674 Length=71378 Score = 140 bits (154), Expect = 3e-28 Identities = 395/607 (65%), Gaps = 0/607 (0%) Strand=Plus/Minus Query 132895 CAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAG 132954 || ||||| || |||||||| ||||| || | || ||||||||| || || || Sbjct 3387 CACGCAAAATCACAATGCAATCCCTCATCGCGACTTATCAGTTCGTTGGCAAACGTTAAA 3328 Query 132955 CCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAG 133014 ||||||| || | ||||| |||||||||||||| || || |||||||| || Sbjct 3327 CCGGGCAATTTACCTCTCTTTTTTAGCCAAAATATGGCAGCAAACGCACCCGAAAAAAAA 3268 Query 133015 ACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCG 133074 | ||| || || | || || || || ||||| || || | ||| ||| || | Sbjct 3267 ATGCCTTCCACCACGGCAAATGCAACAAGGCGGGTACCAAAACTTGCTGTATTGTTGTCT 3208 Query 133075 ATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTC 133134 |||||| | ||||||| || |||| || | ||||| || ||||| || || Sbjct 3207 ATCCAGTCTAATGCCCATTTTGCTTTTTTTTGAATACACGGAATTTCCTCGATTGCATTT 3148 Query 133135 AACAAACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCGAATACATT 133194 | |||| | |||| | || || ||||| || ||||| || |||||||||| Sbjct 3147 ATCAAATGTTGTTTTTGTTTGGAATCTTTTACGTACGTTTCGATCAGCAGCGAATACATT 3088 Query 133195 TCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACC 133254 || || || | || |||||||| || ||||| || || ||| | || | || | Sbjct 3087 TCGGAATGGATATTTTCCATGGCAATCTGAAATCCATAGAAGTATCGGACTTCTGGAATT 3028 Query 133255 TGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCG 133314 || ||||| || || || | | ||||||||| || || || || ||||| || Sbjct 3027 TGAACTTCACGACTAAAGCGTAGCATTAAATTTTCGTTTACAATACCATCACTGGCAGCA 2968 Query 133315 AAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCG 133374 |||||||| | ||||| | || ||||| | || | || | | | ||| ||| Sbjct 2967 AAAAAGGCTAACACGTACAAAATAAAATGTCTTTCATCATCCGTGAGACCAAGCCAATCG 2908 Query 133375 CGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTG 133434 ||| || |||| ||||| || ||| |||||| || ||| | ||||| || Sbjct 2907 TTTACGTCTTTAGACAAATCCACTTCTTCGGTAACCCAAAATGAGGCCACTGCTTTCTTA 2848 Query 133435 TACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTCG 133494 ||||| ||| | || ||||| || ||| ||| ||||||| | || ||| | Sbjct 2847 TACATTTCCCATACATCGTGATATTTAATTGGATAAAGAACAAACCTGGCAGGATTTGAG 2788 Query 133495 CGCAACA 133501 || |||| Sbjct 2787 CGTAACA 2781 >seq407716 Length=13296 Score = 127 bits (140), Expect = 2e-24 Identities = 161/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 133279 ACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATG 133338 ||||||||||| |||||||||||||| ||||| || || || |||| ||||| |||| Sbjct 6533 ACCAGATTTTCATTGACGATGCCGTCACTGGCTGCAAAGAATGCCAAGACGTGTGAGATG 6592 Query 133339 AAATGGCGCTCGTTGTCGTTCAAGCGCT-CCCAGTCGCGCGTGTCCTTGGACAGGTCCAC 133397 || || ||| || | ||| || | |||| | | |||||||| ||||| || Sbjct 6593 AAGTGCTTCTCATTCTTCGTCA-GCTTTGCCCAATGTTCCAGATCCTTGGAGAGGTCGAC 6651 Query 133398 CTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGAATA 133457 ||| || | ||||| ||||||||||||||||| |||||||| ||| ||||| ||| Sbjct 6652 CTCTTCCGCCGTCCAGAACGACGCCTCGGCTTTCTTGTACATGTGCCAGATGTCGTGATA 6711 Query 133458 TTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTCGCG 133496 || ||||| || || ||||||| | ||||| || || Sbjct 6712 CTGGATGGGGAAGATGACAAACCTCCTTGGGTTCTCTCG 6750 >seq34585 Length=75490 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| |||||||||||||| | || || ||| | | Sbjct 7040 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAAACCATCACTCTTGAGGTGGAGCCAAGT 7099 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | ||| | || | ||| |||| ||||||||||| || || | || || Sbjct 7100 GACACTATTGAAAATGTAAAGGCAAAGATCCAAGACAAAGAGGGTATCCCACCAGATCAG 7159 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| ||||| | ||| || || ||||| || |||| || ||||| |||||||| Sbjct 7160 CAGCGTCTCATCTTCGCTGGAAAGCAGCTCGAGGACGGCCGTACCCTGTCAGACTACAAT 7219 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| ||||| | || || ||| | ||||| ||| Sbjct 7220 ATCCAGAAGGAGTCAACTCTTCATCTTGTGCTTCGT 7255 Score = 111 bits (122), Expect = 2e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| || |||||||||||||| | || || ||| | | Sbjct 7268 ATGCAGATCTTCGTGAAGACGCTAACTGGCAAAACCATCACTCTGGAGGTGGAGCCAAGT 7327 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | ||| | || | ||| |||| ||||| ||||| || || | || || Sbjct 7328 GACACTATTGAAAATGTAAAGGCAAAGATCCAGGACAAGGAGGGTATCCCACCAGATCAG 7387 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| ||||| | ||| || || ||||| || |||| || ||||| ||||||||| Sbjct 7388 CAGCGTCTCATCTTCGCTGGAAAGCAGCTCGAGGACGGCCGTACCCTGTCAGACTACAAC 7447 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| || || | || || ||| | ||||| ||| Sbjct 7448 ATCCAGAAAGAGTCTACTCTTCATCTTGTGCTTCGT 7483 Score = 98.7 bits (108), Expect = 1e-15 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| || ||||||||||| | || || ||| | | Sbjct 7724 ATGCAGATCTTCGTCAAGACCCTCACCGGTAAAACCATCACATTGGAGGTGGAGCCGAGT 7783 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | ||| | || | ||| |||| ||||||||||| || || | || || Sbjct 7784 GACACTATTGAAAATGTAAAGGCAAAGATCCAAGACAAAGAGGGTATCCCACCAGATCAG 7843 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| ||||| | ||| ||||| ||||| || || | | ||||| ||||||||| Sbjct 7844 CAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGATGGCAGAACCCTATCTGACTACAAC 7903 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 || || || || | || || ||| | || || ||| | | || |||| Sbjct 7904 ATTCAGAAAGAGTCCACTCTCCATCTTGTTCTCCGTCTCCGTGGTGGCC 7952 >seq620319 Length=78974 Score = 113 bits (124), Expect = 4e-20 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 133279 ACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATG 133338 ||||||||||| |||||||||||||| || || ||||| || |||| || || |||| Sbjct 13701 ACCAGATTTTCATTGACGATGCCGTCACTTGCTGCGAAGAATGCCAAGACATGTGAGATG 13642 Query 133339 AAATGGCGCTCGTTGTCGTTCAAGCGCT-CCCAGTCGCGCGTGTCCTTGGACAGGTCCAC 133397 || || ||| || | ||| || | |||| | | |||||||| ||||| || Sbjct 13641 AAGTGCTTCTCATTCTTCGTCA-GCTTTGCCCAATGTTCCAGATCCTTGGAGAGGTCGAC 13583 Query 133398 CTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGAATA 133457 ||| || | ||||| ||||| ||||||||||| |||||||| ||| ||||| ||| Sbjct 13582 CTCTTCCGCTGTCCAGAACGATGCCTCGGCTTTCTTGTACATGTGCCAGATGTCGTGATA 13523 Query 133458 TTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTCGCG 133496 || ||||| || || || |||| | ||||| || || Sbjct 13522 CTGGATGGGGAAGATGACGAACCTCCTTGGGTTCTCTCG 13484 Score = 82.4 bits (90), Expect = 8e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 ||| ||||||||||| || |||||||| ||||| | ||| || || || || || || Sbjct 14909 GTATGTGTCGATGAGTAATGAGTACATTTCTGAGTGGATGTTTTCGATTGCAATCTGGAA 14850 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACC 133281 ||||| || ||||| |||||| | ||||| |||||||| ||| | ||| ||| Sbjct 14849 CCCGTAGAAACACCGTGCCTCGGCAACCTGAACTTCTTGGCTGAATCTCTCAACC 14795 >seq496440 Length=42271 Score = 93.3 bits (102), Expect = 4e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 133209 CTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGC 133268 |||||| || || || ||||| ||||| ||| |||||| | ||| || |||||| Sbjct 24831 CTCCATTGCAATCTGGAAGCCATAAAAACACTTCGCCTCCGGTATCTGGACCTCTTGACT 24890 Query 133269 GAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCA 133324 ||| | || |||||||| ||||||||||| || |||||||| ||||| ||||||| Sbjct 24891 GAATCTTTCCACCAGATTCTCGTTGACGATTCCATCGCTGGCAGCGAAGAAGGCCA 24946 Score = 91.5 bits (100), Expect = 1e-13 Identities = 103/137 (75%), Gaps = 1/137 (1%) Strand=Plus/Plus Query 132970 CGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCC 133029 |||||||||||||| || ||||| ||||| |||||| ||||||| |||||||| || Sbjct 19185 CGTTTTTTGAGCCAGAAGATGGCTGCGAACGAGCCCGAGAAGAAGATTCCCTCGACAGCA 19244 Query 133030 GCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCC 133089 || || ||||||| | ||| | ||| | || || | | ||||||| ||||| ||| Sbjct 19245 GCAAACGCCACCAATCTCTCACTGAATGAGGAGTCCCTAGCGCCGATCCATCGCAGGGCC 19304 Query 133090 CATTCGGCCTT-TTCTT 133105 || || || || ||||| Sbjct 19305 CAATCAGCTTTCTTCTT 19321 >seq320776 Length=21916 Score = 91.5 bits (100), Expect = 1e-13 Identities = 103/137 (75%), Gaps = 1/137 (1%) Strand=Plus/Plus Query 132970 CGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCC 133029 |||||||||||||| || ||||| ||||| ||||| ||||||| |||||||| || Sbjct 14908 CGTTTTTTGAGCCAGAAGATGGCTGCGAACGAACCCGAGAAGAAGATTCCCTCGACAGCA 14967 Query 133030 GCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCC 133089 || || ||||||| | ||| | ||| | || || || || ||||||| || || ||| Sbjct 14968 GCAAACGCCACCAATCTCTCACTGAATGAGGAGTCCTTAGTGCCGATCCATCGAAGGGCC 15027 Query 133090 CATTCGGCCTT-TTCTT 133105 || || || || ||||| Sbjct 15028 CAATCAGCTTTCTTCTT 15044 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 133209 CTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGC 133268 |||||| || || || ||||| ||||| ||| ||||| | ||| || |||||| Sbjct 20701 CTCCATTGCAATCTGGAAGCCATAAAAACACTTGGCCTCCGGTATCTGGACCTCTTGACT 20760 Query 133269 GAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCA 133324 ||| | || |||||||| ||||||||||| || |||||||| || || ||||||| Sbjct 20761 GAATCTTTCCACCAGATTCTCGTTGACGATTCCATCGCTGGCAGCAAAGAAGGCCA 20816 >seq133437 Length=111544 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| || ||||||||||| | || || ||| | | Sbjct 106566 ATGCAAATCTTCGTCAAGACCCTCACCGGTAAAACCATCACACTGGAGGTGGAGCCAAGT 106625 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | ||| | || | || |||| ||| ||||||| || | | | || Sbjct 106626 GACATTATTGAAAATGTAAAGGCGAAGATCCAAGACGAAGAGGGTATCCAACCACATCAG 106685 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| ||||| | ||| ||||| |||||||| || | | ||||| ||||||||| Sbjct 106686 CAGCGTCTCATCTTCGCTGGCAAGCAGCTGGAGGATGGCAGAACCCTGTCTGACTACAAC 106745 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 || || || || | || || ||| | ||||| Sbjct 106746 ATTCAGAAAGAGACCACTCTCCATCTTGTGCT 106777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496189730176640