Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq407716 89.7 6e-13 seq250674 89.7 6e-13 >seq407716 Length=13296 Score = 89.7 bits (98), Expect = 6e-13 Identities = 98/128 (77%), Gaps = 2/128 (2%) Strand=Plus/Minus Query 102190 TCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGC-GCTATTTATTGG 102248 |||||||||| ||| ||||| ||||||||||| || ||||| ||| || || | ||| Sbjct 4706 TCGCATTTGCTGCTGTAGAGGGAATCTTCTTCTCAGGCTCCTT-TGCTGCCATCTTCTGG 4648 Query 102249 CTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGAC 102308 | |||||| | || || ||||| || ||| |||||||||||| |||||| | ||| Sbjct 4647 TTGAAGAAGAGGGGACTAATGCCTGGACTCACCTTCTCCAACGAACTTATCAGCAGAGAC 4588 Query 102309 GAGGGACT 102316 |||| ||| Sbjct 4587 GAGGTACT 4580 Score = 86.0 bits (94), Expect = 8e-12 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 102544 AGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACGGGAAGACAAACTTCTTCGAAA 102603 |||||||||| ||||||||||||||||| || || || ||||| ||||||||||||| Sbjct 3140 AGAATCCATTCGACTTCATGGAGAACATCTCACTGGAAGGCAAGACGAACTTCTTCGAAA 3081 Query 102604 AGAGGGTTGGGGACTATGGCAAGATGG 102630 ||||||| || || || ||||||| Sbjct 3080 AGAGGGTGGGAGAGTACCAAAAGATGG 3054 >seq250674 Length=71378 Score = 89.7 bits (98), Expect = 6e-13 Identities = 242/358 (68%), Gaps = 18/358 (5%) Strand=Plus/Plus Query 102112 TTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTC-GC-- 102168 |||| ||||||||||| ||||| | ||||| | | ||| | || | || | || Sbjct 3165 TTCCGTGTATTCAAAAAAAAGCAAAATGGGCATTAGACTGGATAGACAACAATACAGCAA 3224 Query 102169 GTTCCTTTGCTGAGCGACTCTTCGCATTTGC-GTGTGTTGAGGGTATCTTCTTCTCTGGT 102227 ||| ||| | || || | |||||||| ||| || || || || || || || ||| Sbjct 3225 GTT---TTGGTACCCGCCTTGTTGCATTTGCCGTG-GTGGAAGGCATTTTTTTTTCGGGT 3280 Query 102228 TCCTTCTGC-GCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTC 102286 | || ||| || || | |||||| || ||| ||||| |||| ||| | || | Sbjct 3281 GCGTT-TGCTGCCATATTTTGGCTAAAAAAGAGAGGTAAATTGCCCGGTTTAACGTTTGC 3339 Query 102287 CAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCGGTGGAACTTTTCAA 102346 |||||| || || ||| || |||||| | || || |||||| || | | | | Sbjct 3340 CAACGAACTGATAAGTCGCGATGAGGGATTGCATTGTGATTTTGCG-TGTCTCCTATACA 3398 Query 102347 ATTAT-TGCGTATTAAACCA---ACGACTGAGACTATTCATTCTATTGTTAAGGAAGCCG 102402 | ||| | | ||||||| ||| || | |||| || || ||||| ||||| | Sbjct 3399 AGTATGTAAAAAATAAACCAGATACGTCTCA---TATTTATCACATGGTTAATGAAGCTG 3455 Query 102403 TTGAGATTGAGAAGGGATTCATATTGGATGCCCTTCCATGCGCTCTCATCGGTATGAA 102460 |||||||||| |||| |||| || ||||||| ||| ||||||||| ||||| || || Sbjct 3456 TTGAGATTGAAAAGGAATTCTTAACGGATGCCTTTCAATGCGCTCTAATCGGGATCAA 3513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615799187731120