Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq364598 107 2e-18 seq251981 95.1 1e-14 seq286747 93.3 5e-14 seq407716 89.7 6e-13 seq80594 86.0 7e-12 seq620319 84.2 3e-11 >seq364598 Length=45638 Score = 107 bits (118), Expect = 2e-18 Identities = 85/102 (83%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 109752 GTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGA 109811 ||||||||| | ||||| || |||| | |||| |||||||| ||||| || |||||||| Sbjct 3297 GTAGATGTTGCTGGTGTACGGCTCGATAGACTCGTTGTTGCCAAGGATCTGGGCAGTGGA 3238 Query 109812 AGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACC 109853 ||| || ||||||||||||| ||| |||||||| ||||| || Sbjct 3237 AGCGGTCGGCATGGGAGCCAGGAGCAGACTGTTGCGGAGGCC 3196 >seq251981 Length=36728 Score = 95.1 bits (104), Expect = 1e-14 Identities = 82/102 (80%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 109752 GTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGA 109811 ||||||||| | ||||| || |||| |||| |||||||| ||||| || || ||||| Sbjct 17393 GTAGATGTTGCTGGTGTACGGCTCGATGGACTCGTTGTTGCCGAGGATCTGGGCCGTGGA 17452 Query 109812 AGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACC 109853 || || ||||||||||||| ||| |||||||| ||||| || Sbjct 17453 GGCGGTCGGCATGGGAGCCAGGAGCAGACTGTTGCGGAGGCC 17494 Score = 86.0 bits (94), Expect = 7e-12 Identities = 157/225 (70%), Gaps = 4/225 (2%) Strand=Plus/Plus Query 110524 TACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTG-TCGGGACA 110582 |||| || |||||||||| ||| |||| || | || || | || || | ||| || Sbjct 21335 TACAGTTCTTCAAATTCCTCTCCCCACACGTCTGCGAGTCC-TGGGCATTCATGGGGGCA 21393 Query 110583 GAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACAT 110642 | || | ||||| ||| | | ||| |||||||||||||||||||| || | ||||| Sbjct 21394 CATCAGCGTCCAATCGCCATCTTGCTCGACCCTCTTCATGAACAGGTCGGGCACCCACAG 21453 Query 110643 CGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTT-GAGGCGTAGCTCCA 110701 || |||||||||||||| ||| ||| || | || ||||| | || || | Sbjct 21454 GGCGTAGAAAAGGTCACGGGCACGCTGCTCCTCTTTCCCGTGGTTCTTCTTGCAG-TCTA 21512 Query 110702 AAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGA 110746 ||||| | ||| |||| ||||| || ||||| |||| |||| Sbjct 21513 GGAAGTCGAAGATGTCCGCATGCCACGGCTCGAGGTAGATTGCGA 21557 >seq286747 Length=126893 Score = 93.3 bits (102), Expect = 5e-14 Identities = 155/219 (71%), Gaps = 4/219 (2%) Strand=Plus/Minus Query 110524 TACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTT-GTCGGGACA 110582 |||| || |||||||||| ||| |||| || | || || | || || || ||| || Sbjct 122727 TACAGTTCTTCAAATTCCTCTCCCCACACGTCTGCGAGTCC-TGGGCATTCGTGGGGGCA 122669 Query 110583 GAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACAT 110642 | || | ||||| ||| | | |||||||||||||||||||||||| || | ||||| Sbjct 122668 CATCAGCGTCCAATCGCCATCTTGCTCAACCCTCTTCATGAACAGGTCGGGCACCCACAG 122609 Query 110643 CGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTT-GAGGCGTAGCTCCA 110701 || |||||||||||||| ||| ||| || | || ||||| | || || | Sbjct 122608 GGCGTAGAAAAGGTCACGGGCACGCTGCTCCTCTTTCCCGTGGTTCTTCTTGCAG-TCTA 122550 Query 110702 AAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGA 110740 ||||| | ||| |||| ||||| || ||||| |||| Sbjct 122549 GGAAGTCGAAGATGTCCGCATGCCAGGGCTCGAGGTAGA 122511 >seq407716 Length=13296 Score = 89.7 bits (98), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 119208 TAGTCACCCACCCTCTTTTCGAAGAAATTCGTCTTACCATCGAGTGAGATGTTTTCCATA 119267 || || |||||||||||||||||||| |||||||| || || ||||||||||| ||||| Sbjct 3065 TACTCTCCCACCCTCTTTTCGAAGAAGTTCGTCTTGCCTTCCAGTGAGATGTTCTCCATG 3124 Query 119268 AAGTCAAAAGGATT 119281 ||||| || ||||| Sbjct 3125 AAGTCGAATGGATT 3138 >seq80594 Length=476 Score = 86.0 bits (94), Expect = 7e-12 Identities = 199/294 (68%), Gaps = 12/294 (4%) Strand=Plus/Minus Query 11499 CTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGT 11558 || ||| || |||||||| ||||| || | || || || | |||| ||||| || Sbjct 304 CTGACGGTCAAAACGACCGGGGCGAAGCAATGCCGGGTCGAGCACATCGGGTCGGTTAGT 245 Query 11559 AGCGGCAATGACTACAATGCCAGTCTCATTG---TCGAAACCGTCCATTTCTGTGAGAAG 11615 || || ||||| | || |||| || ||| ||||| |||||||| || || | Sbjct 244 GGCTGCCATGACGATAACGCCA---TCGTTGCCCTCGAAGCCGTCCATCTCGACCAGCAA 188 Query 11616 CTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACC--ACCTGCCGAACGCTTC 11673 |||||| | || || ||||||||||||| || || || ||| || || | | Sbjct 187 CTGGTTCAGGGTTTGCTCACGCTCATCGT--GACCGCCACCCAGACCAGCGCCTCGATGC 130 Query 11674 TTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGT-GCCTG 11732 ||| ||||| || || ||||||||||| | ||| || || | ||| | | || || Sbjct 129 CGACCAACAGCATCGATTTCATCGATGAAGATGATGCA-GGGAGATTGTTTCTTCGCTTG 71 Query 11733 TTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAA 11786 |||||| | || || ||||| || || || || ||||||||||| || || Sbjct 70 TTCGAACATGTCGCGCACACGTGATGCACCGACTCCCACGAACATCTCTACAAA 17 >seq620319 Length=78974 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 119208 TAGTCACCCACCCTCTTTTCGAAGAAATTCGTCTTACCATCGAGTGAGATGTTTTCCATA 119267 || || ||||||||||| |||||||| |||||||| || || ||||||||||| ||||| Sbjct 17860 TACTCTCCCACCCTCTTCTCGAAGAAGTTCGTCTTGCCTTCCAGTGAGATGTTCTCCATG 17801 Query 119268 AAGTCAAAAGGATT 119281 ||||| || ||||| Sbjct 17800 AAGTCGAATGGATT 17787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584285755883800