Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq34585 136 9e-27 seq156656 96.9 8e-15 >seq34585 Length=75490 Score = 136 bits (150), Expect = 9e-27 Identities = 120/150 (80%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 |||||| || |||||||||||||| ||||| ||||| || | || ||||| ||||| || Sbjct 7933 AACAAGATGGAGAGTGGACTCTTTCTGAATGTTGTAGTCAGATAGGGTTCTGCCATCCTC 7874 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||||||||| || |||||||| || || || || ||||| || || || ||||||||||| Sbjct 7873 GAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCTGGTGGGATACCCTCTTTGTCTTG 7814 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTC 195080 || ||| ||| || || ||||| ||||| Sbjct 7813 GATCTTTGCCTTTACATTTTCAATAGTGTC 7784 Score = 127 bits (140), Expect = 5e-24 Identities = 156/212 (74%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| |||||||| ||||| || || |||||||| || | || || | || || ||| Sbjct 7248 ACAAGATGAAGAGTTGACTCCTTCTGGATATTGTAGTCTGACAGGGTACGGCCGTCCTCG 7189 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || || || || ||||| || || || ||||||||||| Sbjct 7188 AGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCTGGTGGGATACCCTCTTTGTCTTGG 7129 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGGGTAACCGTC 195108 || ||| ||| || || ||||| ||||| |||| ||||| ||||| || | || Sbjct 7128 ATCTTTGCCTTTACATTTTCAATAGTGTC---ACTTGGCTCCACCTCAAGAGTGATGGTT 7072 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || | || || ||||| | ||||| Sbjct 7071 TTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 7040 Score = 113 bits (124), Expect = 1e-19 Identities = 153/212 (72%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| |||||||| |||||||| || || ||||| || | || || | || || ||| Sbjct 7476 ACAAGATGAAGAGTAGACTCTTTCTGGATGTTGTAGTCTGACAGGGTACGGCCGTCCTCG 7417 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || || || || ||||| || || || || ||||| || Sbjct 7416 AGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCTGGTGGGATACCCTCCTTGTCCTGG 7357 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGGGTAACCGTC 195108 || ||| ||| || || ||||| ||||| |||| ||||| || || || | || Sbjct 7356 ATCTTTGCCTTTACATTTTCAATAGTGTC---ACTTGGCTCCACCTCCAGAGTGATGGTT 7300 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || | || || ||||| | ||||| Sbjct 7299 TTGCCAGTTAGCGTCTTCACGAAGATCTGCAT 7268 Score = 102 bits (112), Expect = 2e-16 Identities = 118/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||| | ||| ||||| |||||||| || || || || |||||||| || | || || | Sbjct 7030 GAGACGCAACACAAGATGAAGAGTTGATTCCTTCTGGATATTGTAGTCTGACAGGGTACG 6971 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 || || ||||||||||| || || ||||| || || || || ||||| || || ||||| Sbjct 6970 GCCGTCCTCGAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGATCTGGTGGGATACCTTC 6911 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTC 195080 ||||| || || ||| || ||||| || ||||| || Sbjct 6910 CTTGTCCTGGATCTTTGCTTTCACGTTTTCGATGGTATC 6872 Score = 102 bits (112), Expect = 2e-16 Identities = 118/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||| | ||| || || |||||||| ||||| || || |||||||| || | || || | Sbjct 7714 GAGACGCAACACGAGATGAAGAGTCGACTCCTTCTGGATATTGTAGTCTGACAGGGTACG 7655 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 || || ||||||||||| ||||| ||||| || || || || ||||| || || ||||| Sbjct 7654 GCCGTCCTCGAGCTGCTTTCCTGCAAAGATGAGACGCTGCTGATCTGGCGGGATACCTTC 7595 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTC 195080 ||||| || || ||| || || || || ||||| || Sbjct 7594 CTTGTCCTGGATCTTTGCTTTCACATTTTCGATGGTATC 7556 >seq156656 Length=67780 Score = 96.9 bits (106), Expect = 8e-15 Identities = 92/118 (78%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||| |||| ||||| || || |||||||| || ||||| ||||| || | || || | Sbjct 29882 GAGCCTCAGTACAAGATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCTGACAGGGTGCG 29823 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 |||||||| |||||||| || || ||||| || || || ||||| |||||||||||| Sbjct 29822 GCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGAATGCCT 29765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1100425487297457