Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq34585 107 1e-18 seq133437 87.8 1e-12 >seq34585 Length=75490 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| || || ||||| || ||| | || | || || ||||| ||||| ||||| Sbjct 7686 TCCTTCTGGATATTGTAGTCTGACAGGGTACGGCCGTCCTCGAGCTGCTTTCCTGCAAAG 7627 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||| ||| |||| | || |||||||| ||||| ||| || | Sbjct 7626 ATGAGACGCTGCTGATCTGGCGGGATACCTTCCTTGTCCTGGATCTTTGCTTTCACATTT 7567 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | |||| || ||| || || | || ||||| || || ||||| ||||||||| Sbjct 7566 TCGATGGTATCACTGGGCTCTACCTCTAATGTGATGGTCTTGCCAGTGAGGGTCTTCACA 7507 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 7506 AAGATCTGCATA 7495 Score = 100 bits (110), Expect = 2e-16 Identities = 138/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| || || ||||| || ||| | || | || || ||||| ||||| ||||| Sbjct 7003 TTCCTTCTGGATATTGTAGTCTGACAGGGTACGGCCGTCCTCGAGCTGCTTTCCAGCAAA 6944 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || ||||| ||| | || | || |||||||| ||||| ||| ||| Sbjct 6943 GATGAGACGCTGCTGATCTGGTGGGATACCTTCCTTGTCCTGGATCTTTGCTTTCACGTT 6884 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | | || | || | || ||| || || | || ||||| || || ||||| |||||||| Sbjct 6883 TTCGATGGTATCGCTGGGCTCTACCTCTAGTGTGATGGTCTTGCCAGTGAGCGTCTTCAC 6824 Query 34970 AAAGATCTGCATA 34982 |||||||||||| Sbjct 6823 GAAGATCTGCATA 6811 Score = 98.7 bits (108), Expect = 6e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| ||||| || ||| | || | || || ||||| ||||| || || Sbjct 7458 TCTTTCTGGATGTTGTAGTCTGACAGGGTACGGCCGTCCTCGAGCTGCTTTCCAGCGAAG 7399 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||| ||| | || | ||||||||||| ||||| || || | Sbjct 7398 ATGAGACGCTGCTGATCTGGTGGGATACCCTCCTTGTCCTGGATCTTTGCCTTTACATTT 7339 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | |||| | ||| || || | || |||||||| || || || |||||||| Sbjct 7338 TCAATAGTGTCACTTGGCTCCACCTCCAGAGTGATGGTTTTGCCAGTTAGCGTCTTCACG 7279 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 7278 AAGATCTGCATA 7267 Score = 98.7 bits (108), Expect = 6e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||||||||| ||||| || ||| ||| |||| || ||||| || || || || Sbjct 7914 TCTTTCTGAATGTTGTAGTCAGATAGGGTTCTGCCATCCTCGAGCTGCTTGCCAGCGAAG 7855 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||| ||| | || | ||||| ||||| ||||| || || | Sbjct 7854 ATGAGACGCTGCTGATCTGGTGGGATACCCTCTTTGTCTTGGATCTTTGCCTTTACATTT 7795 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | |||| | ||| || || | || |||||||| || ||||| ||||| || Sbjct 7794 TCAATAGTGTCACTCGGCTCCACCTCCAATGTGATGGTTTTACCGGTGAGGGTCTTGACG 7735 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 7734 AAGATCTGCATA 7723 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| || || ||||| || ||| | || | || || ||||| ||||| || || Sbjct 7230 TCCTTCTGGATATTGTAGTCTGACAGGGTACGGCCGTCCTCGAGCTGCTTTCCAGCGAAG 7171 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||| ||| | || | ||||| ||||| ||||| || || | Sbjct 7170 ATGAGACGCTGCTGATCTGGTGGGATACCCTCTTTGTCTTGGATCTTTGCCTTTACATTT 7111 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | |||| | ||| || || | || |||||||| || ||||| ||||| || Sbjct 7110 TCAATAGTGTCACTTGGCTCCACCTCAAGAGTGATGGTTTTGCCAGTGAGGGTCTTGACG 7051 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 7050 AAGATCTGCATA 7039 >seq133437 Length=111544 Score = 87.8 bits (96), Expect = 1e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 34785 GTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCG 34844 ||| | |||||||||||||| ||||| || ||| ||| |||| |||||||| || || Sbjct 106762 GTGGTCTCTTTCTGAATGTTGTAGTCAGACAGGGTTCTGCCATCCTCCAGCTGCTTGCCA 106703 Query 34845 GCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTG 34904 || || || || || ||||| | | | | | ||||| | ||| |||||| || Sbjct 106702 GCGAAGATGAGACGCTGCTGATGTGGTTGGATACCCTCTTCGTCTTGGATCTTCGCCTTT 106643 Query 34905 ACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTC 34964 || | | || |||| | ||| || || | || |||||||| || ||||| ||| Sbjct 106642 ACATTTTCAATAATGTCACTTGGCTCCACCTCCAGTGTGATGGTTTTACCGGTGAGGGTC 106583 Query 34965 TTCACAAAGATCTGCATA 34982 || || ||||| |||||| Sbjct 106582 TTGACGAAGATTTGCATA 106565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322113046426488