Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq250674 318 7e-82 >seq250674 Length=71378 Score = 318 bits (352), Expect = 7e-82 Identities = 616/903 (68%), Gaps = 32/903 (4%) Strand=Plus/Minus Query 18661 ACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAAT 18720 || ||||||||||||||||| |||||| | ||||||| |||||||| || || || || Sbjct 3687 ACACCCATTTTTTGATATTCCCCAACTCGTCTTTCAAAAAAATTAGTCTTGCCTTCCAAC 3628 Query 18721 GATATACATTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAAT 18780 || || ||||||||| ||||||||||| | |||||||| | || | | |||| | Sbjct 3627 GAAATGTTTTCCATAAAGTCAAATGGATTGTCAACATTATACACCTTATCGTATCCGAGC 3568 Query 18781 TCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTC-ATCATATCACAATTCAT 18839 || | |||||||||||| || ||||||| ||||| ||| | |||| | || || Sbjct 3567 TCAAGTAGTAGTCTATCGGCAACAAATTCTATATAC-TGTCCCATCAGAGTTGCGTTGAT 3509 Query 18840 TCCTATTA------ATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTAC 18893 || |||| ||| || || ||||| || | ||||| | ||| || | || Sbjct 3508 CCCGATTAGAGCGCATTGAA-----AG-GCATCCGTTAAGAATTCCTTTTCAATCTCAAC 3455 Query 18894 TGCCTCTG-----ATATAATAGATACAACTC-TATCTTCATTAGGAGGGTATAGAAGATG 18947 || || || | ||| ||| | | ||||| ||| | | | || Sbjct 3454 AGCTTCATTAACCATGTGATAAATATGAGACGTATCTGGTTTA------TTTTTTACATA 3401 Query 18948 TTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATT 19007 || | | | ||| |||||||||||||| | |||||| || | |||||||| ||| || Sbjct 3400 CTTGTATAGGAGACACGCAAAATCACAATGCAATCCCTCATCGCGACTTATCAGTTCGTT 3341 Query 19008 AGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGA 19067 | ||| |||||||| |||| ||||| ||||||| ||| ||||| | |||||| | Sbjct 3340 GGCAAACGTTAAACCGGGCAATTTACCTCTCTTTTTTAGCCAAAATATGGCAGCAAACGC 3281 Query 19068 TCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGC 19127 || ||||| || || ||||| || | ||||| ||||| || | ||| |||| || Sbjct 3280 ACCCGAAAAAAAAATGCCTTCCACCACGGCAAATGCAACAAGGCGGGTACCAAAACTTGC 3221 Query 19128 ATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGT 19187 ||| || | ||||| | | |||||| | || || |||| | ||| || ||| Sbjct 3220 TGTATTGTTGTCTATCCAGTCTAATGCCCATTTTGCTTTTTTTTGAATACACGGAATTTC 3161 Query 19188 CTCTATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAA 19247 ||| || | ||| | | || | | | |||||| || || | || |||| Sbjct 3160 CTCGATTGCATTTATCAAATGTTGTTTTTGTTTGGAATCTTTTACGTACGTTTCGATCAG 3101 Query 19248 TAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCT 19307 | |||||||| ||||| |||||||| || || ||||||||||| || || ||| Sbjct 3100 CAGCGAATACATTTCGGAATGGATATTTTCCATGGCAATCTGAAATCCATAGAAGTATCG 3041 Query 19308 TGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCC 19367 |||||| || || ||||||| || ||| | | | |||||||| || || || || Sbjct 3040 GACTTCTGGAATTTGAACTTCACGACTAAAGCGTAGCATTAAATTTTCGTTTACAATACC 2981 Query 19368 ATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAA 19427 |||||| || |||||||| ||||| || | |||||||||| ||||||| || | Sbjct 2980 ATCACTGGCAGCAAAAAAGGCTAACACGTACAAAATAAAATGTCTTTCATCATCCGTGAG 2921 Query 19428 TGTATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTC---AACTGTCCAAAAAGA 19484 | |||||| || | |||||||| ||||| |||||||| ||| |||||| || Sbjct 2920 ACCAAGCCAATCGTTTACGTCTTTAGACAAATCCACTTCTTCGGTAAC---CCAAAATGA 2864 Query 19485 AGCCTCTGCTTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAA 19544 ||| ||||||| |||||||| | ||||| ||| |||||| || ||| | | |||||| Sbjct 2863 GGCCACTGCTTTCTTATACATTTCCCATACATCGTGATATTTAATTGGATAAAGAACAAA 2804 Query 19545 TCT 19547 || Sbjct 2803 CCT 2801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557632509808440