Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq250674 300 2e-76 >seq250674 Length=71378 Score = 300 bits (332), Expect = 2e-76 Identities = 611/898 (68%), Gaps = 22/898 (2%) Strand=Plus/Minus Query 36876 ACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGT 36935 || ||||||||||||||||| |||||||||||||| |||||||| ||||| ||||| | Sbjct 3687 ACACCCATTTTTTGATATTCCCCAACTCGTCTTTCAAAAAAATTAGTCTTGCCTTCCAAC 3628 Query 36936 GATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAGTACTACATGATAAT 36995 || || ||||||||||| ||||||||||| |||||| | || || | Sbjct 3627 GAAATGTTTTCCATAAAGTCAAATGGATTGTCAACATTATACACCTTATCGTATCCGAGC 3568 Query 36996 TCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTATA 37055 || || || ||||| |||||||||||||| || | | ||| || ||| || Sbjct 3567 TCAAGTAGTAGTCTATCGGCAACAAATTCTATATACTGTCCCATCAGAGTTGCGTTGATC 3508 Query 37056 CCAATTAGTTTTACTGGAATTGCATCT-TGAAGAAATAGTTTTTCTATTATTACAGCATC 37114 || ||||| | ||| ||||| | ||||| | |||| | || ||||| || Sbjct 3507 CCGATTAGAGCGCATTGAAAGGCATCCGTTAAGAATTCCTTTT-CAATCTCAACAGCTTC 3449 Query 37115 TTTAACTATATTAACAATA----ACTTCTTCAGTTGGGGGATATTTTAAATATTTAAACA 37170 ||||| || | | |||| || | | ||| || ||||| ||| || | | Sbjct 3448 ATTAACCATGTGATAAATATGAGACGTATCTGGTTT----ATTTTTTACATACTTGTATA 3393 Query 37171 ATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGG 37230 | ||| |||||||||||||| || || ||||| | |||||||| ||| || | ||| | Sbjct 3392 GGAGACACGCAAAATCACAATGCAATCCCTCATCGCGACTTATCAGTTCGTTGGCAAACG 3333 Query 37231 TTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAA 37290 |||| || |||| | |||||| ||||| | ||||||||| || ||||| | || |||| Sbjct 3332 TTAAACCGGGCAATTTACCTCTCTTTTTTAGCCAAAATATGGCAGCAAACGCACCCGAAA 3273 Query 37291 AGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAAT 37350 | ||||| ||||| || | |||||||| ||||| || ||||| ||| ||| ||| | Sbjct 3272 AAAAAATGCCTTCCACCACGGCAAATGCAACAAGGCGGGTACCAAAACTTGCTGTATTGT 3213 Query 37351 CAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTG 37410 ||||| | | || ||| | ||| ||| || || ||| |||| || |||| Sbjct 3212 TGTCTATCCAGTCTAATGCCCATTTTGCTTTTTTTTGAATACACGGAATTTCCTCGATTG 3153 Query 37411 CTTTTAAGAGAAAGtt-tttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTA 37469 | |||| | || ||| ||||| || |||| ||| || || || || || | | Sbjct 3152 CATTTATCA-AATGTTGTTTTTGTTTGGAATCTTTTACGTACGTTTCGATCAGCAGCGAA 3094 Query 37470 TACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCA 37529 |||||||| || || |||||||| || || |||||||| ||||| || | | |||| Sbjct 3093 TACATTTCGGAATGGATATTTTCCATGGCAATCTGAAATCCATAGAAGTATCGGACTTCT 3034 Query 37530 GATAATTGAACATCGTTAAAAAACCTCTTAGC--TAAGTTTTCATTAACTATCCCATCAC 37587 | | |||||| || | ||| | |||| ||| ||||| || || || ||||||| Sbjct 3033 GGAATTTGAACTTCACGACTAAA--GCGTAGCATTAAATTTTCGTTTACAATACCATCAC 2976 Query 37588 TAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAATTTTT 37647 | || ||||| || || | || || ||||||||||||||||||| | | Sbjct 2975 TGGCAGCAAAAAAGGCTAACACGTACAAAATAAAATGTCTTTCATCATCCGTGAGACCAA 2916 Query 37648 TCCAATCATTAATATCTTTTGATAAATCAACTTCATC---AACGGTCCAAAAACTTGCCA 37704 |||||| || | ||||| || ||||| ||||| || ||| |||||| |||| Sbjct 2915 GCCAATCGTTTACGTCTTTAGACAAATCCACTTCTTCGGTAAC---CCAAAATGAGGCCA 2859 Query 37705 ATGCACGTTTATACATCGTCCAAATATCATTATGTTGTATTGGAAATATTACAAATCT 37762 ||| |||||||| ||| | ||| | || || |||||| | | ||||| || Sbjct 2858 CTGCTTTCTTATACATTTCCCATACATCGTGATATTTAATTGGATAAAGAACAAACCT 2801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587599951798840