Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq407716 122 2e-22 seq620319 113 8e-20 seq251981 111 3e-19 seq496440 109 1e-18 seq364598 109 1e-18 seq320776 109 1e-18 seq286747 102 2e-16 seq314599 98.7 2e-15 >seq407716 Length=13296 Score = 122 bits (134), Expect = 2e-22 Identities = 138/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 48155 TCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTG 48214 ||||| | |||||| || ||||||||||| ||| |||||||| | ||||||| || Sbjct 4586 TCGTCTCTGCTGATAAGTTCGTTGGAGAAGGTGAGTCCAGGCATTAGTCCCCTCTTCTTC 4645 Query 48215 AGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCG 48274 | |||||| || || || || ||||| ||||||||||| ||||| || || || || ||| Sbjct 4646 AACCAGAAGATGGCAGCAAAGGAGCCTGAGAAGAAGATTCCCTCTACAGCAGCAAATGCG 4705 Query 48275 GTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCC 48334 | |||| |||||| ||| | | || || ||||||| |||||||| | |||| Sbjct 4706 ACTACCCTCGTCCCGAAATCAGCCTCGTCGTGTGCGATCCAGTTGAGCGCCCACTGTGCC 4765 Query 48335 TTCTT 48339 ||||| Sbjct 4766 TTCTT 4770 >seq620319 Length=78974 Score = 113 bits (124), Expect = 8e-20 Identities = 136/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 48155 TCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTG 48214 ||||| | |||||| || ||||||||||| ||| || ||||| | ||||| | || Sbjct 15678 TCGTCTCTGCTGATAAGTTCGTTGGAGAAGGTGAGTCCGGGCATTAGTCCCCTTTTCTTC 15619 Query 48215 AGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCG 48274 | |||||| || || || || ||||||||||||||||| ||||| || || || || || Sbjct 15618 AACCAGAAGATGGCAGCAAAGGAGCCAGAGAAGAAGATTCCCTCTACGGCGGCAAATGCA 15559 Query 48275 GTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCC 48334 | ||| |||||| ||| || | || || ||||||| |||||||| | |||| Sbjct 15558 ACTACCCTTGTACCGAAATCAGCCTTGTCGTGTGCGATCCAGTTGAGCGCCCACTGTGCC 15499 Query 48335 TTCTT 48339 ||||| Sbjct 15498 TTCTT 15494 >seq251981 Length=36728 Score = 111 bits (122), Expect = 3e-19 Identities = 179/246 (73%), Gaps = 10/246 (4%) Strand=Plus/Plus Query 213718 ACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACC-CTGTCCAGTCCCGGACAGG-A 213775 ||| ||| || || || | ||||| | ||||| || ||| | ||||| || || | Sbjct 21327 ACTTTTCATACAGTTCTTCAAATTCCTCTCCCCACACGTCTG-CGAGTCCTGGGCATTCA 21385 Query 213776 TGCGGGACACATGAGGCTCCAGTCCCCGTCAT-CTCTGACTCTCTGCATGAACAGGTCCG 213834 || ||| ||||| || |||| || || || | ||| ||| |||| |||||||||||| | Sbjct 21386 TGGGGG-CACATCAGCGTCCAATCGCCATCTTGCTC-GACCCTCTTCATGAACAGGTCGG 21443 Query 213835 GGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGC 213894 | |||||||| ||| ||| ||||| | || | | ||| || ||| | | || | | Sbjct 21444 GCACCCACAGGGCGTAGAAAAGGTCACGGGCACGCTGCTCCTCTT-TCCCGTGGTTCTTC 21502 Query 213895 --GCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGC 213952 |||| ||||| ||||| ||||||||||| ||||||||||| | |||||| || || || Sbjct 21503 TTGCAG-TCTAGGAAGTCGAAGATGTCCGCATGCCACGGCTCGAGGTAGATTGCGAAAGC 21561 Query 213953 GCCCGG 213958 ||||| Sbjct 21562 ACCCGG 21567 Score = 104 bits (114), Expect = 4e-17 Identities = 123/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 212888 CAGGCACTTGACCAGGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTG 212947 |||| ||| | || || ||||| || |||||||| || || ||||| || | ||| Sbjct 17333 CAGGTCCTTCAGGAGATGCGGGTTCACAATCTGGAACTCTCCCGAGAGGACGCGCCTGGT 17392 Query 212948 GTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCT 213007 ||| | ||| ||||| ||||||||| ||||||||| || || ||||| || ||| Sbjct 17393 GTAGATGTTGCTGGTGTACGGCTCGATGGACTCGTTGTTGCCGAGGATCTGGGCCGTGGA 17452 Query 213008 GGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTGCT 213054 ||| || ||||||||||||| || |||||||| | | ||||||| Sbjct 17453 GGCGGTCGGCATGGGAGCCAGGAGCAGACTGTTGCGGAGGCCGTGCT 17499 Score = 104 bits (114), Expect = 4e-17 Identities = 121/164 (74%), Gaps = 12/164 (7%) Strand=Plus/Plus Query 213192 GCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTG 213251 ||||| |||||| |||| || || || ||||||||||| ||||| |||| ||||| Sbjct 18699 GCCAGTTCGCAGCTGGCCTTCAACGCGGCATAGTAGATGGTCTCAAAGATCTGGATGTTG 18758 Query 213252 AGCTTCTTGGCCTCTGG------GGACGTGAAGGGCATCATCATGCGTTGGAACACATCA 213305 || ||||||||||| || | | | |||| ||||||| || ||| |||| Sbjct 18759 AGTTTCTTGGCCTCGGGGCTTTCGAATGGGAAGCGCATCATGAT------GAAAGCATCT 18812 Query 213306 GCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTT 213349 ||||| |||||||| ||||| |||||||| | ||||| || ||| Sbjct 18813 GCCAGACCCTGGACGCCGATACCGATGGGGCGGTGTCGCATGTT 18856 Score = 95.1 bits (104), Expect = 2e-14 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 213530 GTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTT 213589 |||||| | |||||| ||||| ||||| ||||| |||||||||||||||||| ||||| Sbjct 20631 GTACTCAACGATCTCCGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTTCTGCTGGTT 20690 Query 213590 TGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGA 213649 ||| |||| | |||||||||| ||||||||| | || |||||| |||||| Sbjct 20691 GCTCTTGCGGTTGCAATGGTCCTTGTAGACCATGTAGGGAGTACCCGTCTCTGTCTGGGA 20750 Score = 84.2 bits (92), Expect = 4e-11 Identities = 98/130 (75%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 212696 GTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATA-T 212754 ||| |||||||| |||||||| ||| | | ||| |||| |||||| | || | | | Sbjct 15353 GTTGAGGGACTGGCTCTGGTCGATGTACGCCCCCCGGTCAATGGCCATCTGGATCACAGT 15412 Query 212755 CTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCCGG 212814 || ||||||||| |||||||||||||||| | | |||||| ||| ||||||| | | Sbjct 15413 CT-TCTGGGAGATCTCCCACACGGTCTTGTAAAGAGCTTTGATGTCATCTGGGATTTCTG 15471 Query 212815 GGATGTTCTG 212824 |||| | ||| Sbjct 15472 GGATTTGCTG 15481 >seq496440 Length=42271 Score = 109 bits (120), Expect = 1e-18 Identities = 160/226 (71%), Gaps = 3/226 (1%) Strand=Plus/Plus Query 47973 ACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACACGGGCAAAGCCT 48032 ||| |||||| | ||||||| | |||||| || ||||||| ||||| | ||| | Sbjct 16280 ACTGGATGTACTGACACATGAGTACGGCGTTCATCCCAATGAGGGCGACGGGGAGAGCGT 16339 Query 48033 TTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTAACGCGGGACT 48092 |||| || |||| ||| | | || |||||||| | |||| | | ||||| Sbjct 16340 CGCTGAGGAATTCCTCCTCCAGGCGGACTGCTTCCCCGATGATCTCTTGGATACGGGAGA 16399 Query 48093 CTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGC 48152 | || || || | | || || || |||||| |||||||||||| | ||| | || Sbjct 16400 CGGACGGACGGTGGAGGAGATG---GGAGAAGAGCAGGCAGGCAAAGTCGCAGTGGAGGC 16456 Query 48153 CTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCAT 48198 | ||||| |||||||||||| ||||||||||| |||||| ||||| Sbjct 16457 CCTCGTCGCGGCTGATGAGCTCGTTGGAGAAGGTGAGACCTGGCAT 16502 >seq364598 Length=45638 Score = 109 bits (120), Expect = 1e-18 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 212888 CAGGCACTTGACCAGGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTG 212947 |||| ||| | || |||||||| || |||||||| || || ||||| || | ||| Sbjct 3357 CAGGTCCTTCAGGAGATGAGGGTTCACGATCTGGAACTCTCCCGAGAGGACGCGCCTGGT 3298 Query 212948 GTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCT 213007 ||| | ||| ||||| |||||||| ||||||||| || || ||||| |||||| Sbjct 3297 GTAGATGTTGCTGGTGTACGGCTCGATAGACTCGTTGTTGCCAAGGATCTGGGCAGTGGA 3238 Query 213008 GGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCG 213067 || || ||||||||||||| || |||||||| | | ||||||| | ||||| | Sbjct 3237 AGCGGTCGGCATGGGAGCCAGGAGCAGACTGTTGCGGAGGCCGTGCTTGGCGATGTCGGC 3178 Query 213068 CCGAAGCTCTGCCCAGTC 213085 | ||| | |||||||| Sbjct 3177 CTTCAGCGCCGCCCAGTC 3160 Score = 104 bits (114), Expect = 4e-17 Identities = 121/164 (74%), Gaps = 12/164 (7%) Strand=Plus/Minus Query 213192 GCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTG 213251 ||||| |||||| |||| || || || ||||||||||| ||||| |||| ||||| Sbjct 2040 GCCAGTTCGCAGCTGGCCTTCAACGCGGCATAGTAGATGGTCTCAAAGATCTGGATGTTG 1981 Query 213252 AGCTTCTTGGCCTCTGG------GGACGTGAAGGGCATCATCATGCGTTGGAACACATCA 213305 || ||||||||||| || | ||| |||| |||||| || ||| |||| Sbjct 1980 AGTTTCTTGGCCTCGGGGCTCTCGAACGGGAAGCGCATCAAGAT------GAAGGCATCC 1927 Query 213306 GCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTT 213349 ||||| |||||||| ||||| |||||||| | ||||| || ||| Sbjct 1926 GCCAGACCCTGGACGCCGATACCGATGGGGCGGTGTCGCATGTT 1883 Score = 84.2 bits (92), Expect = 4e-11 Identities = 98/130 (75%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 212696 GTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATA-T 212754 ||| ||||||||||||||||| ||| | | ||| |||| |||||| | || | | Sbjct 4312 GTTGAGGGACTGACTCTGGTCGATGTACGCCCCCCGGTCAATGGCCATCTGGATCACGGT 4253 Query 212755 CTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCCGG 212814 || ||||||||| |||||||||||||||| | | |||||| ||| ||||| | | | Sbjct 4252 CT-TCTGGGAGATCTCCCACACGGTCTTGTACAGAGCTTTGATGTCATCTGGAATTTCTG 4194 Query 212815 GGATGTTCTG 212824 |||| ||||| Sbjct 4193 GGATATTCTG 4184 >seq320776 Length=21916 Score = 109 bits (120), Expect = 1e-18 Identities = 160/226 (71%), Gaps = 3/226 (1%) Strand=Plus/Plus Query 47973 ACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACACGGGCAAAGCCT 48032 ||| |||||| | ||||||| | |||||| || ||||||| ||||| | ||| | Sbjct 11175 ACTGGATGTACTGACACATGAGTACGGCGTTCATCCCGATGAGGGCGACGGGGAGAGCGT 11234 Query 48033 TTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTAACGCGGGACT 48092 |||| ||||||| ||| | | || |||||||| | |||| | | || || Sbjct 11235 CGCTGAGGAACTCCTCCTCCAGGCGGACTGCTTCCCCGATGATCTCTTGGATACGAGAGA 11294 Query 48093 CTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGC 48152 | || || || | | || || || |||||| |||||||||||| | ||| | || Sbjct 11295 CGGACGGACGGTGGAGGAGATG---GGAGAAGAGCAGGCAGGCAAAGTCGCAGTGGAGGC 11351 Query 48153 CTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCAT 48198 | ||||| |||||||||||| ||||||||||| |||||| ||||| Sbjct 11352 CCTCGTCGCGGCTGATGAGCTCGTTGGAGAAGGTGAGACCTGGCAT 11397 >seq286747 Length=126893 Score = 102 bits (112), Expect = 2e-16 Identities = 175/245 (71%), Gaps = 8/245 (3%) Strand=Plus/Minus Query 213718 ACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACC-CTGTCCAGTCCCGGACAGGAT 213776 ||| ||| || || || | ||||| | ||||| || ||| | ||||| || || Sbjct 122735 ACTTTTCATACAGTTCTTCAAATTCCTCTCCCCACACGTCTG-CGAGTCCTGGGCATTCG 122677 Query 213777 GCGGGACACATGAGGCTCCAGTCCCCGTCAT-CTCTGACTCTCTGCATGAACAGGTCCGG 213835 ||| ||||| || |||| || || || | ||| || |||| |||||||||||| || Sbjct 122676 TGGGGGCACATCAGCGTCCAATCGCCATCTTGCTCA-ACCCTCTTCATGAACAGGTCGGG 122618 Query 213836 GACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGC- 213894 |||||||| ||| ||| ||||| | || | | ||| || ||| | | || | | Sbjct 122617 CACCCACAGGGCGTAGAAAAGGTCACGGGCACGCTGCTCCTCTT-TCCCGTGGTTCTTCT 122559 Query 213895 -GCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCG 213953 |||| ||||| ||||| ||||||||||| ||||| ||||| | |||||| |||||||| Sbjct 122558 TGCAG-TCTAGGAAGTCGAAGATGTCCGCATGCCAGGGCTCGAGGTAGATTGCAAAGGCA 122500 Query 213954 CCCGG 213958 || || Sbjct 122499 CCTGG 122495 Score = 86.0 bits (94), Expect = 1e-11 Identities = 93/121 (77%), Gaps = 2/121 (2%) Strand=Plus/Minus Query 213530 GTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTT 213589 |||||| | ||||| ||||| ||||| || || |||||||||||||||||| ||||| Sbjct 124233 GTACTCGACTATCTCCGTGCAGAGGTTACTACACTTGATGGTGCCCAGGTTCTGTTGGTT 124174 Query 213590 TGACTTTGCGTTGGCAGAA-TCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGG 213648 ||| ||| | |||| |||||||| | ||||||||||| || ||||| ||||| Sbjct 124173 GCTCTT-GCGGTTGCAGTGGTCCTTGTACACCATGTAGGGGGTACCCGTCTCCGTCTGGG 124115 Query 213649 A 213649 | Sbjct 124114 A 124114 >seq314599 Length=83989 Score = 98.7 bits (108), Expect = 2e-15 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558 |||||||| |||||||| || | ||| || || || ||||| ||||||||| ||||| Sbjct 72703 TTCACTTTGTCCTCCAGACGGGAGATACGCTCGAGCTTGCGTTTACGGCATTTGCTGGCT 72762 Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618 || | |||||||| ||| | || || || || |||||||| || || |||||||||| Sbjct 72763 GCGATGCGGTTCCTGAGGCGTTTTCGCTCGGCTTTGATGCGCTCTTGTGTCTCCATGTCG 72822 Query 241619 ATCGGAGAC 241627 || || ||| Sbjct 72823 ATGGGTGAC 72831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 924114643344640