Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq251981 122 2e-22 seq364598 107 4e-18 seq407716 102 2e-16 seq620319 96.9 6e-15 seq496440 86.0 1e-11 seq320776 86.0 1e-11 >seq251981 Length=36728 Score = 122 bits (134), Expect = 2e-22 Identities = 112/142 (79%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175 |||||| | ||||| ||||||||||| || | ||| ||| | ||| ||| |||| Sbjct 17354 GTTCACAATCTGGAACTCTCCCGAGAGGACGCGCCTGGTGTAGATGTTGCTGGTGTACGG 17413 Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235 |||||| |||||||||||| |||||||| |||||| |||||| |||||||| |||| Sbjct 17414 CTCGATGGACTCGTTGTTGCCGAGGATCTGGGCCGTGGAGGCGGTCGGCATGGGAGCCAG 17473 Query 221236 CAGCAGACTGTTGCGCAGTCCG 221257 |||||||||||||| || ||| Sbjct 17474 GAGCAGACTGTTGCGGAGGCCG 17495 Score = 98.7 bits (108), Expect = 2e-15 Identities = 105/136 (77%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 221423 GCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGAAGTG 221482 || || | ||||||||||||||||||| |||||||| ||||||||||||| | Sbjct 18723 GCGGCATAGTAGATGGTCTCAAAGATCTGGATGTTGAGTTTCTTGGCCTCGGGGCTTTCG 18782 Query 221483 AAGGGCATACGCAGCAT-CTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGG 221541 || || | |||| ||| |||||| | || ||||| ||||| || |||||||||||||| Sbjct 18783 AATGGGAAGCGCATCATGATGAAAG-CATCTGCCAGACCCTGGACGCCGATACCGATGGG 18841 Query 221542 CCTGTGTCTCCTGTTG 221557 | ||||| | ||||| Sbjct 18842 GCGGTGTCGCATGTTG 18857 Score = 84.2 bits (92), Expect = 4e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 221731 CACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGT 221790 |||||| ||| | ||| |||| | |||||| || |||||||| |||||||||||||| Sbjct 20613 CACCTCATCCGGGCTGGAGTACTCAACGATCTCCGTGCAGAGGTTACTGCACTTGATGGT 20672 Query 221791 CCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGACC 221850 ||||||| | || || |||||| ||| | ||||||||||| ||| ||||| Sbjct 20673 GCCCAGGTTCTGCTGGTTGCTCTTGCGGTTGCAATGGTCCTTGTAGACCATGTAGGGAGT 20732 Query 221851 GCCAGTCTC 221859 || ||||| Sbjct 20733 ACCCGTCTC 20741 Score = 84.2 bits (92), Expect = 4e-11 Identities = 112/153 (73%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 222031 GACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTG 222090 |||||||| |||||| ||||| || | |||||| || | || || || | || ||||| Sbjct 21421 GACCCTCTTCATGAACAGGTCGGGCACCCACAGGGCGTAGAAAAGGTCACGGGCACGCTG 21480 Query 222091 CTCCTCCACGCCGTTGTTTTTCCT-CAGATCCAAAAACTCAAAAATGTCAGCGTGCCACG 222149 |||||| |||| ||| ||| | ||| || | || || || ||||| || ||||||| Sbjct 21481 CTCCTCTTTCCCGTGGTTCTTCTTGCAG-TCTAGGAAGTCGAAGATGTCCGCATGCCACG 21539 Query 222150 GCTCCAGATAGACGGCCAGAGCGCCGGGTCGCT 222182 |||| || |||| || | ||| || || |||| Sbjct 21540 GCTCGAGGTAGATTGCGAAAGCACCCGGACGCT 21572 >seq364598 Length=45638 Score = 107 bits (118), Expect = 4e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175 |||||| | ||||| ||||||||||| || | ||| ||| | ||| ||| |||| Sbjct 3336 GTTCACGATCTGGAACTCTCCCGAGAGGACGCGCCTGGTGTAGATGTTGCTGGTGTACGG 3277 Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235 ||||| |||||||||||| |||||||| || ||| ||||| |||||||| |||| Sbjct 3276 CTCGATAGACTCGTTGTTGCCAAGGATCTGGGCAGTGGAAGCGGTCGGCATGGGAGCCAG 3217 Query 221236 CAGCAGACTGTTGCGCAGTCCG 221257 |||||||||||||| || ||| Sbjct 3216 GAGCAGACTGTTGCGGAGGCCG 3195 Score = 91.5 bits (100), Expect = 3e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 221423 GCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGAAGTG 221482 || || | ||||||||||||||||||| |||||||| ||||||||||||| | Sbjct 2016 GCGGCATAGTAGATGGTCTCAAAGATCTGGATGTTGAGTTTCTTGGCCTCGGGGCTCTCG 1957 Query 221483 AAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGC 221542 || || | |||| || ||| | || ||||| ||||| || |||||||||||||| Sbjct 1956 AACGGGAAGCGCATCAAGATGAAGGCATCCGCCAGACCCTGGACGCCGATACCGATGGGG 1897 Query 221543 CTGTGTCTCCTGTTG 221557 | ||||| | ||||| Sbjct 1896 CGGTGTCGCATGTTG 1882 >seq407716 Length=13296 Score = 102 bits (112), Expect = 2e-16 Identities = 138/187 (74%), Gaps = 4/187 (2%) Strand=Plus/Minus Query 25824 GAAGGCGCGGTGGGCCATGAAGTGGATCA-ACAGCCAGAGCGCTACGTTTGGCGAGCGGC 25882 |||||| | |||||| | || |||||| ||| ||| ||| || || | || Sbjct 4768 GAAGGCACAGTGGGCGCTCAACTGGATCGCACACGACGAG-GCTGATTTCGGGACGAGGG 4710 Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942 | || || ||||||||||| ||||| ||||| ||| || || ||||| |||||||||| Sbjct 4709 TAGTCGCATTTGCTGCTGTAGAGGGAATCTTCTTCTCAGGCTCCTTTGCTGCCATCTTCT 4650 Query 25943 GGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGG 26001 || | ||| || ||||||| ||||| || || ||| |||||||| || |||||||| Sbjct 4649 GGTTGAAGAAG-AGGGGACTAATGCCTGGACTCACCTTCTCCAACGAACTTATCAGCAGA 4591 Query 26002 GACGAGG 26008 ||||||| Sbjct 4590 GACGAGG 4584 >seq620319 Length=78974 Score = 96.9 bits (106), Expect = 6e-15 Identities = 98/125 (78%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 25885 GTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGG 25944 || || ||||| || || ||||| ||||| ||| || || ||||| |||||||||||| Sbjct 15557 GTTGCATTTGCCGCCGTAGAGGGAATCTTCTTCTCTGGCTCCTTTGCTGCCATCTTCTGG 15616 Query 25945 CTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGA 26003 | ||| | |||||||| |||||||| || ||| |||||||| || |||||||| || Sbjct 15617 TTGAAG-AAAAGGGGACTAATGCCCGGACTCACCTTCTCCAACGAACTTATCAGCAGAGA 15675 Query 26004 CGAGG 26008 ||||| Sbjct 15676 CGAGG 15680 >seq496440 Length=42271 Score = 86.0 bits (94), Expect = 1e-11 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 26245 AACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAG 26304 || ||||| ||||| ||||| ||||| ||||||||||| ||| |||||||||| || ||| Sbjct 15228 AATCCGTTTGACTTCATGGAGAACATCTCGTTGGAAGGCAAGTCCAACTTCTTCGAGAAG 15169 Query 26305 AGGGTCGGCGACTATCA 26321 |||||||||| || || Sbjct 15168 CGGGTCGGCGAGTACCA 15152 Score = 84.2 bits (92), Expect = 4e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 25963 ATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGAT 26022 ||||| || || ||| |||||||||||||||||| | |||||||| |||||| | || Sbjct 16502 ATGCCAGGTCTCACCTTCTCCAACGAGCTCATCAGCCGCGACGAGGGCCTCCACTGCGAC 16443 Query 26023 TTTGCCTGCCTGCTCT 26038 |||||||||||||||| Sbjct 16442 TTTGCCTGCCTGCTCT 16427 >seq320776 Length=21916 Score = 86.0 bits (94), Expect = 1e-11 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 26245 AACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAG 26304 || ||||| ||||| ||||| ||||| ||||||||||| ||| |||||||||| || ||| Sbjct 9886 AATCCGTTTGACTTCATGGAGAACATCTCGTTGGAAGGCAAGTCCAACTTCTTCGAGAAG 9827 Query 26305 AGGGTCGGCGACTATCA 26321 |||||||||| || || Sbjct 9826 CGGGTCGGCGAGTACCA 9810 Score = 86.0 bits (94), Expect = 1e-11 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 25576 GAGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAAC 25635 ||| |||| ||| ||| | || ||||| |||||||| ||| ||||| || || ||| Sbjct 20841 GAGAAGCACTTTGTCAGCCATGTCTTGGCCTTCTTTGCTGCCAGCGATGGAATCGTCAAC 20782 Query 25636 GAGAATCTGTGCGAGAGATTCACCAGGGAAGTGCAG-TACGTGGAGGCCAAGTGTTTCTA 25694 ||||||||| || ||||||| || || ||| ||| ||||||||||||||| || Sbjct 20781 GAGAATCTGGTGGAAAGATTCAGTCAAGAGGTCCAGATACC-GGAGGCCAAGTGTTTTTA 20723 Query 25695 CGGTTTCCAGATGGCCATCGA 25715 || |||||||| || || || Sbjct 20722 TGGCTTCCAGATTGCAATGGA 20702 Score = 84.2 bits (92), Expect = 4e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 25963 ATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGAT 26022 ||||| || || ||| |||||||||||||||||| | |||||||| |||||| | || Sbjct 11397 ATGCCAGGTCTCACCTTCTCCAACGAGCTCATCAGCCGCGACGAGGGCCTCCACTGCGAC 11338 Query 26023 TTTGCCTGCCTGCTCT 26038 |||||||||||||||| Sbjct 11337 TTTGCCTGCCTGCTCT 11322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921448048930240