Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq250674 237 2e-57 >seq250674 Length=71378 Score = 237 bits (262), Expect = 2e-57 Identities = 566/848 (67%), Gaps = 14/848 (2%) Strand=Plus/Minus Query 17863 TTTTTTG-TATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTA 17921 ||||||| ||||| || ||| | | || || ||||| ||||| |||||||| || || Sbjct 3680 TTTTTTGATATTCCCCAACTCGTCTTTCAAAAAAATTAGTCTTGCCTTCCAACGAAATGT 3621 Query 17922 AATTCATAAAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTATTAATTCGTATA 17981 | |||||| ||||||||||| ||||| || || | | | || || Sbjct 3620 TTTCCATAAAGTCAAATGGATTGTCAACATTATACACCTTATCGTATCCGAGCTCAAGTA 3561 Query 17982 ATAATCTATCTGCTACAAATTCGACATATTGTGACATCAAA-TCGCAATTCATACCTAGT 18040 || |||||| || |||||||| | ||| ||| ||||| | | || || || || | | Sbjct 3560 GTAGTCTATCGGCAACAAATTCTATATACTGTCCCATCAGAGTTGCG-TTGATCCCGATT 3502 Query 18041 AGTCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTATT 18100 || | | | | ||||| | | ||||| || || |||||||||| || || | Sbjct 3501 AGAGCGCATTGAAAGGCATCCGTTAAGAATTCCTTTTCAATCTCAACAGCTTCATTAACC 3442 Query 18101 ATGT--TTATTACCCTAGATTT-TGGCAATTTATTAATTATGTGATTATAATATAATAAA 18157 |||| | | || | | | ||| |||||| ||| | || || || | | Sbjct 3441 ATGTGATAAATATGAGACGTATCTGG---TTTATTTTTTACATACTTGTA---TAGGAGA 3388 Query 18158 CACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAAC 18217 |||||||||||| || || || ||||| | ||| | |||||| ||||||||| Sbjct 3387 CACGCAAAATCACAATGCAATCCCTCATCGCGACTTATCAGTTCGTTGGCAAACGTTAAA 3328 Query 18218 CCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAAT 18277 ||||||| | ||||||| ||||||||||||||||| | || || || ||||| || Sbjct 3327 CCGGGCAATTTACCTCTCTTTTTTAGCCAAAATATGGCAGCAAACGCACCCGAAAAAAAA 3268 Query 18278 ATACCCTCAACGCACG-CGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCAG 18336 || || || || |||| | || || | | | | ||||||| | ||||| | Sbjct 3267 ATGCCTTCCAC-CACGGCAAATGCAACAAGGCGGGTACCAAAACTTGCTGTATTGTTGTC 3209 Query 18337 TATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATT 18396 |||||| | | |||||||| | ||| |||||||| || ||| || ||||| Sbjct 3208 TATCCAGTCTAATGCCCATTTTGCTTTTTTTTGAATACACGGAATTTCCTCGATTGCATT 3149 Query 18397 AAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACAT 18456 | ||||| | ||||| |||||||||||||| || || ||||| | || |||||||| Sbjct 3148 TATCAAATGTTGTTTTTGTTTGGAATCTTTTACGTACGTTTCGATCAGCAGCGAATACAT 3089 Query 18457 TTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATA 18516 ||| ||||| || ||||||| || |||||||| | ||| || ||| | || ||| Sbjct 3088 TTCGGAATGGATATTTTCCATGGCAATCTGAAATCCATAGAAGTATCGGACTTCTGGAAT 3029 Query 18517 TTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGC 18576 ||||| || | | ||| | | | ||||| || || || ||||| ||| | || Sbjct 3028 TTGAACTTCACGACTAAAGCGTAGCATTAAATTTTCGTTTACAATACCATCACTGGCAGC 2969 Query 18577 GAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCCATTC 18636 ||||| || || || || ||| |||||| |||||| |||| ||||| ||| || Sbjct 2968 AAAAAAGGCTAACACGTACAAAATAAAATGTCTTTCATCATCCGTGAGACCAAGCCAATC 2909 Query 18637 ATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTGTTT 18696 | || ||||| || | ||| |||||||| | |||||| || | | || | || Sbjct 2908 GTTTACGTCTTTAGACAAATCCACTTCTTCGGTAACCCAAAATGAGGCCACTGCTTTCTT 2849 Query 18697 GTACATTT 18704 ||||||| Sbjct 2848 ATACATTT 2841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 726043819663600