Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq250674 149 1e-30 seq34585 95.1 2e-14 >seq250674 Length=71378 Score = 149 bits (164), Expect = 1e-30 Identities = 385/592 (65%), Gaps = 2/592 (0%) Strand=Plus/Minus Query 49815 TATATTAAACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTA 49874 |||| | ||| ||||||||| ||| || ||||| || | | ||| | ||| || | Sbjct 3396 TATAGGAGACACGCAAAATCACAATGCAATCCCTCATCGCGACTTATCAGTTCGTTGGCA 3337 Query 49875 AAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTA 49934 || ||||| || |||| | ||||||||||| ||||||||||| | ||||| || Sbjct 3336 AACGTTAAACCGGGCAATTTACCTCTCTTTTTTAGCCAAAATATGGCAGCAAACGCACCC 3277 Query 49935 GAAAAGAATATACCCTCGACACACG-CAAATGCTATTATTCTTGCTCCAAACATTAATTT 49993 ||||| || || || || || |||| ||||||| | | | | ||||| || | | Sbjct 3276 GAAAAAAAAATGCCTTCCAC-CACGGCAAATGCAACAAGGCGGGTACCAAAACTTGCTGT 3218 Query 49994 ATCATCTAATATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTC 50053 || | |||||| | || ||||| | ||||||||||| ||| | || || | || Sbjct 3217 ATTGTTGTCTATCCAGTCTAATGCCCATTTTGCTTTTTTTTGAATACACGGAATTTCCTC 3158 Query 50054 TATAGCTTTAAATAATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAA 50113 || || || | || | | ||||| | || | | Sbjct 3157 GATTGCATTTATCAAATGTTGTTTTTGTTTGGAATCTTTTACGTACGTTTCGATCAGCAG 3098 Query 50114 AGAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGC 50173 ||||||||||| ||||| | | |||||| || || |||||| ||| || | || | Sbjct 3097 CGAATACATTTCGGAATGGATATTTTCCATGGCAATCTGAAATCCATAGAAGTATCGGAC 3038 Query 50174 TTCTGAATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATC 50233 ||||| | |||||||| | || ||| | |||||| || |||||||||||| Sbjct 3037 TTCTGGAATTTGAACTTCACGACTAAAGCGTAGCATTAAATTTTCGTTTACAATACCATC 2978 Query 50234 AGATGCTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAATT 50293 | || || || || ||||| ||||| |||||||||| |||||| ||| | | | Sbjct 2977 ACTGGCAGCAAAAAAGGCTAACACGTACAAAATAAAATGTCTTTCATCATCCGTGAGACC 2918 Query 50294 TTCCCAAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGCTAC 50353 |||| | | || || || ||||| |||||||| | ||||||||| || || Sbjct 2917 AAGCCAATCGTTTACGTCTTTAGACAAATCCACTTCTTCGGTAACCCAAAATGAGGCCAC 2858 Query 50354 GGATTTTTTATACATTTGATATATATCAAAATGTTCAATGGGAAATAGTACA 50405 | ||| |||||||||| ||| ||| || || ||| ||| | || ||| Sbjct 2857 TGCTTTCTTATACATTTCCCATACATCGTGATATTTAATTGGATAAAGAACA 2806 >seq34585 Length=75490 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||| || || | ||| | || | ||| || |||||| || ||| Sbjct 6813 ATACCACCACGGAGACGCAACACAAGATGAAGTGTTGACTCCTTCTGGATATTGTAGTCA 6754 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| || | || || ||||| ||||| | || ||| ||||||||| Sbjct 6753 GACAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGTCGCTGCTGATCAGGT 6694 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || || || || || || ||||| || | ||| | ||| Sbjct 6693 GGGATACCTTCCTTGTCCTGGATCTTGGCCTTCACATTTTCAATGGTATCACTAGGTTCG 6634 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || ||||| || ||||| | ||||| | ||| |||||||| Sbjct 6633 ACCTCAAGTGTGATGGTCTTGCCAGTGAGAGTTTTCACAAAGATCTGCAT 6584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 976444209380850