Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq250674 120 5e-22 >seq250674 Length=71378 Score = 120 bits (132), Expect = 5e-22 Identities = 549/874 (63%), Gaps = 15/874 (2%) Strand=Plus/Minus Query 38831 TTTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAA 38890 |||||| ||||| |||| | |||| ||||| || || || ||||| || || || Sbjct 3679 TTTTTGATATTCCCCAACTCGTCTTTCAAAAAAATTAGTCTTGCCTTCCAACGAAATGTT 3620 Query 38891 ATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATC--AATACATAT 38948 | |||||| ||||||||||| | |||||| || || |||| | || | Sbjct 3619 TTCCATAAAGTCAAATGGATTGTCAACATTATACACCTTATCG--TATCCGAGCTCAAGT 3562 Query 38949 AATAATCTATCGGCCACAAATTCAACATATTGTAACATTA-ATTCACAATTCATACCCAA 39007 | || ||||||||| |||||||| | ||| ||| ||| | | | | || || || | Sbjct 3561 AGTAGTCTATCGGCAACAAATTCTATATACTGTCCCATCAGAGTTGCG-TTGATCCCGAT 3503 Query 39008 TAATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaat 39067 || || | || ||||| | ||||| ||||| || || ||||||| |||| Sbjct 3502 TAGAGCGCATTGAAAGGCATCCGTTAAGAATTCCTTTTCAATCTCAACAGCTTCATTAAC 3443 Query 39068 tatc--ataattatattattttttgataatttatatttaatatgattcgcatataGTAAA 39125 || |||| ||| | | | | ||||| ||| | || || ||||| | | Sbjct 3442 CATGTGATAAATATGAGACGTATC--TGGTTTATTTTTTACATACTTG---TATAGGAGA 3388 Query 39126 CATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAAT 39185 || |||||||| ||| || || || || | | ||| | ||| || ||| ||||| Sbjct 3387 CACGCAAAATCACAATGCAATCCCTCATCGCGACTTATCAGTTCGTTGGCAAACGTTAAA 3328 Query 39186 CCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAAT 39245 || |||| | ||||||||||| ||||||||||| | ||||| || ||||| || Sbjct 3327 CCGGGCAATTTACCTCTCTTTTTTAGCCAAAATATGGCAGCAAACGCACCCGAAAAAAAA 3268 Query 39246 ATACCCTCCACACACG-CAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAA 39304 || || ||||| |||| ||||||| | | | | ||||| || | ||| | Sbjct 3267 ATGCCTTCCAC-CACGGCAAATGCAACAAGGCGGGTACCAAAACTTGCTGTATTGTTGTC 3209 Query 39305 AATCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTT 39364 ||||| | || ||||| | ||||||||||| ||| | || || | || || || || Sbjct 3208 TATCCAGTCTAATGCCCATTTTGCTTTTTTTTGAATACACGGAATTTCCTCGATTGCATT 3149 Query 39365 AAATAATTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATACAT 39424 | || | | |||||||| Sbjct 3148 TATCAAATGTTGTTTTTGTTTGGAATCTTTTACGTACGTTTCGATCAGCAGCGAATACAT 3089 Query 39425 TTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCTGAATA 39484 ||| ||||| | | |||||| || || |||||| ||| || | | |||||| | Sbjct 3088 TTCGGAATGGATATTTTCCATGGCAATCTGAAATCCATAGAAGTATCGGACTTCTGGAAT 3029 Query 39485 CTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGC 39544 |||||||| | || ||| | |||||| || ||||||||||||| || || Sbjct 3028 TTGAACTTCACGACTAAAGCGTAGCATTAAATTTTCGTTTACAATACCATCACTGGCAGC 2969 Query 39545 GAAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAAGA 39604 || || ||||| || || |||||||||| |||||| ||| | | | |||| Sbjct 2968 AAAAAAGGCTAACACGTACAAAATAAAATGTCTTTCATCATCCGTGAGACCAAGCCAATC 2909 Query 39605 TTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCTACGGATTTTTT 39664 | | || || || ||||| |||||||| | |||||| || || || | ||| || Sbjct 2908 GTTTACGTCTTTAGACAAATCCACTTCTTCGGTAACCCAAAATGAGGCCACTGCTTTCTT 2849 Query 39665 ATACATTTGATATATATCAAAATGTTCAATGGGA 39698 |||||||| ||| ||| || || ||| ||| Sbjct 2848 ATACATTTCCCATACATCGTGATATTTAATTGGA 2815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 897928051291800