Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq250674 208 2e-48 >seq250674 Length=71378 Score = 208 bits (230), Expect = 2e-48 Identities = 365/521 (70%), Gaps = 8/521 (2%) Strand=Plus/Plus Query 133073 AGGTTTGTTATGTTCCCAATTAAGGACGACGAGATTTGGCAGATGTATAAAAAA-CAGCA 133131 ||||||||| | | |||||||| | |||| | ||| | |||||||| ||| ||| Sbjct 2801 AGGTTTGTTCTTTATCCAATTAAATATCACGATGTATGGGAAATGTATAAGAAAGCAGTG 2860 Query 133132 AGATTTATTTTGGACTTCAACTGAAGTAGATTTATCCAAAGACCCAGCCCACTGGGAAGC 133191 | | ||||||| | | ||||| ||||| || |||||| | | | ||| | Sbjct 2861 -GCCTCATTTTGGGTTACCGAAGAAGTGGATTTGTCTAAAGACGTAAACGATTGGCTTGG 2919 Query 133192 CCTTACTGGGGATGAAAAACATTTTA-TTTCTATGATTTTAGCGTTTTTTGCTGCGAGTG 133250 || || | ||||||| |||||||| ||| || | | ||||| ||||||||||| |||| Sbjct 2920 TCTCACGGATGATGAAAGACATTTTATTTTGTACG-TGTTAGCCTTTTTTGCTGCCAGTG 2978 Query 133251 ATGGTATTGTTCTTGAAAATTTAGGAACACGGTTTATGGGAGAAGTTCAACTGGCCGAAG 133310 |||||||||| ||||||||| ||| |||| | ||||||||| | | |||| Sbjct 2979 ATGGTATTGTAAACGAAAATTTAATGCTACGCTTTAGTCGTGAAGTTCAAATTCCAGAAG 3038 Query 133311 CCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACATATTCTA 133370 ||| ||| ||||| | |||||||| ||||||||||||||||| | ||||| Sbjct 3039 TCCGATACTTCTATGGATTTCAGATTGCCATGGAAAATATCCATTCCGAAATGTATTCGC 3098 Query 133371 CTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCACAAACTATTCAACGCCATTA 133430 || || || || ||| | |||||| || || || || | | | || || || Sbjct 3099 TGCTGATCGAAACGTACGTAAAAGATTCCAAACAAAAACAACATTTGATAAATGCAATCG 3158 Query 133431 GCGAATTTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTA-AATGGATCCAGGACAAG 133489 ||| |||| |||||| |||| ||| | | ||||| |||| | ||||| | |||| Sbjct 3159 AGGAAATTCCGTGTATTCAAAAAAAAGCAAAATGGGC-ATTAGACTGGATAGACAACAAT 3217 Query 133490 CGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGT 133549 || ||||||| ||| || || ||||| ||||| || || || ||||||||||| Sbjct 3218 ACAGCAAGTTTTGGTACCCGCCTTGTTGCATTTGCCGTGGTGGAAGGCATTTTTTTTTCG 3277 Query 133550 GGTGCGTTCTGCT-CTATTTTTTGGCTTAAAAAGCGTGGTA 133589 |||||||| |||| | || |||||||| |||||| | |||| Sbjct 3278 GGTGCGTT-TGCTGCCATATTTTGGCTAAAAAAGAGAGGTA 3317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1459803929774927