Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq34585 127 2e-24 seq133437 102 7e-17 >seq34585 Length=75490 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||||| || || || || || || || || ||||| ||| | Sbjct 6812 ATGCAGATCTTCGTGAAGACGCTCACTGGCAAGACCATCACACTAGAGGTAGAGCCCAGC 6871 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || ||| ||||||||| ||||| ||||| || || || ||||| Sbjct 6872 GATACCATCGAAAACGTGAAAGCAAAGATCCAGGACAAGGAAGGTATCCCACCAGATCAG 6931 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | |||||||| || || ||||| ||||| | | | ||||||| || || Sbjct 6932 CAGCGTCTCATCTTTGCTGGAAAGCAGCTCGAGGACGGCCGTACCCTGTCAGACTACAAT 6991 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || || |||||||| || || || | |||||||| Sbjct 6992 ATCCAGAAGGAATCAACTCTTCATCTTGTGTTGCG 7026 Score = 120 bits (132), Expect = 3e-22 Identities = 152/208 (73%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||||||||| || || | || || || | | Sbjct 7724 ATGCAGATCTTCGTCAAGACCCTCACCGGTAAAACCATCACATTGGAGGTGGAGCCGAGT 7783 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| ||||| |||||||||||||||||| || || || || ||||| Sbjct 7784 GACACTATTGAAAATGTAAAGGCAAAGATCCAAGACAAAGAGGGTATCCCACCAGATCAG 7843 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | ||||| || || || ||||| |||||| |||| | | || || || ||| Sbjct 7844 CAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGATGGCAGAACCCTATCTGACTACAAC 7903 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 ||||| || || || || || || |||| Sbjct 7904 ATTCAGAAAGAGTCCACTCTCCATCTTG 7931 Score = 118 bits (130), Expect = 9e-22 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || || | || ||||| ||| Sbjct 7496 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACATTAGAGGTAGAGCCCAGT 7555 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || ||| ||||||||| ||||| ||||| || || || ||||| Sbjct 7556 GATACCATCGAAAATGTGAAAGCAAAGATCCAGGACAAGGAAGGTATCCCGCCAGATCAG 7615 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | |||||||| || || ||||| ||||| | | | ||||||| || || Sbjct 7616 CAGCGTCTCATCTTTGCAGGAAAGCAGCTCGAGGACGGCCGTACCCTGTCAGACTACAAT 7675 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || || ||||| ||||| || || | |||||||| Sbjct 7676 ATCCAGAAGGAGTCGACTCTTCATCTCGTGTTGCG 7710 Score = 105 bits (116), Expect = 6e-18 Identities = 149/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || ||||| || || || || || || | | Sbjct 7040 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAAACCATCACTCTTGAGGTGGAGCCAAGT 7099 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| ||||| |||||||||||||||||| || || || || ||||| Sbjct 7100 GACACTATTGAAAATGTAAAGGCAAAGATCCAAGACAAAGAGGGTATCCCACCAGATCAG 7159 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | ||||| || || || ||||| ||||| | | | ||||||| || || Sbjct 7160 CAGCGTCTCATCTTCGCTGGAAAGCAGCTCGAGGACGGCCGTACCCTGTCAGACTACAAT 7219 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 || || ||||| || || || || |||| Sbjct 7220 ATCCAGAAGGAGTCAACTCTTCATCTTG 7247 Score = 105 bits (116), Expect = 6e-18 Identities = 149/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || |||||||| || ||||| || || || || || || | | Sbjct 7268 ATGCAGATCTTCGTGAAGACGCTAACTGGCAAAACCATCACTCTGGAGGTGGAGCCAAGT 7327 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| ||||| ||||||||| ||||| || || || || || ||||| Sbjct 7328 GACACTATTGAAAATGTAAAGGCAAAGATCCAGGACAAGGAGGGTATCCCACCAGATCAG 7387 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | ||||| || || || ||||| ||||| | | | ||||||| || ||| Sbjct 7388 CAGCGTCTCATCTTCGCTGGAAAGCAGCTCGAGGACGGCCGTACCCTGTCAGACTACAAC 7447 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 || || || || || || || || |||| Sbjct 7448 ATCCAGAAAGAGTCTACTCTTCATCTTG 7475 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| || || || || || || || || || || ||| | | Sbjct 6584 ATGCAGATCTTTGTGAAAACTCTCACTGGCAAGACCATCACACTTGAGGTCGAACCTAGT 6643 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || || |||||||| ||||| ||||| || || || ||||| Sbjct 6644 GATACCATTGAAAATGTGAAGGCCAAGATCCAGGACAAGGAAGGTATCCCACCTGATCAG 6703 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | ||||| || || || ||||| |||||| | | |||| || || || Sbjct 6704 CAGCGACTCATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACTCTGTCTGACTACAAT 6763 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || || ||||| || ||||| || | |||||||| Sbjct 6764 ATCCAGAAGGAGTCAACACTTCATCTTGTGTTGCG 6798 >seq133437 Length=111544 Score = 102 bits (112), Expect = 7e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || || ||||||||||| || || || || || || | | Sbjct 106566 ATGCAAATCTTCGTCAAGACCCTCACCGGTAAAACCATCACACTGGAGGTGGAGCCAAGT 106625 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||| | |||| ||||| |||||||||||| |||| || || | || |||| Sbjct 106626 GACATTATTGAAAATGTAAAGGCGAAGATCCAAGACGAAGAGGGTATCCAACCACATCAG 106685 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | ||||| || || || |||||||||||| |||| | |||| || || ||| Sbjct 106686 CAGCGTCTCATCTTCGCTGGCAAGCAGCTGGAGGATGGCAGAACCCTGTCTGACTACAAC 106745 Query 24884 ATTCAAAAGGA 24894 ||||| || || Sbjct 106746 ATTCAGAAAGA 106756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 446314891075880