Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq34585 122 6e-23 seq156656 95.1 8e-15 seq133437 86.0 4e-12 >seq34585 Length=75490 Score = 122 bits (134), Expect = 6e-23 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| || || ||||| || ||| | || | || || || |||||||| || || Sbjct 7687 CTCCTTCTGGATATTGTAGTCTGACAGGGTACGGCCGTCCTCGAGCTGCTTTCCTGCAAA 7628 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||| || || ||||| ||| |||| | || |||||||| | || ||| ||| || Sbjct 7627 GATGAGACGCTGCTGATCTGGCGGGATACCTTCCTTGTCCTGGATCTTTGCTTTCACATT 7568 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | | || | ||| ||| ||| || || | || |||||||| || ||||||||||| || Sbjct 7567 TTCGATGGTATCACTGGGCTCTACCTCTAATGTGATGGTCTTGCCAGTGAGGGTCTTCAC 7508 Query 34966 AAAGATCTGCAT 34977 |||||||||||| Sbjct 7507 AAAGATCTGCAT 7496 Score = 109 bits (120), Expect = 4e-19 Identities = 141/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| || || ||||| || || |||| |||| || || ||||| || ||||| Sbjct 6775 CTCCTTCTGGATATTGTAGTCAGACAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAA 6716 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||| ||||| ||||| || | || | || |||||||| | || || || || Sbjct 6715 GATGAGTCGCTGCTGATCAGGTGGGATACCTTCCTTGTCCTGGATCTTGGCCTTCACATT 6656 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | | || | ||| | | ||||| |||| || |||||||| || ||||| || || || Sbjct 6655 TTCAATGGTATCACTAGGTTCGACCTCAAGTGTGATGGTCTTGCCAGTGAGAGTTTTCAC 6596 Query 34966 AAAGATCTGCATGAT 34980 ||||||||||||||| Sbjct 6595 AAAGATCTGCATGAT 6581 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| || || ||||| || ||| | || | || || || |||||||| ||||| Sbjct 7231 CTCCTTCTGGATATTGTAGTCTGACAGGGTACGGCCGTCCTCGAGCTGCTTTCCAGCGAA 7172 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||| || || ||||| ||| | || | ||||| ||||| | || ||| || || Sbjct 7171 GATGAGACGCTGCTGATCTGGTGGGATACCCTCTTTGTCTTGGATCTTTGCCTTTACATT 7112 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | | || | ||| | | ||| || |||| || ||||| || || ||||||||||| || Sbjct 7111 TTCAATAGTGTCACTTGGCTCCACCTCAAGAGTGATGGTTTTGCCAGTGAGGGTCTTGAC 7052 Query 34966 AAAGATCTGCAT 34977 ||||||||||| Sbjct 7051 GAAGATCTGCAT 7040 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||| ||||||||||| ||||| |||||| | | |||| || || ||||| || ||||| Sbjct 7915 CTCTTTCTGAATGTTGTAGTCAGATAGGGTTCTGCCATCCTCGAGCTGCTTGCCAGCGAA 7856 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||| || || ||||| ||| | || | ||||| ||||| | || ||| || || Sbjct 7855 GATGAGACGCTGCTGATCTGGTGGGATACCCTCTTTGTCTTGGATCTTTGCCTTTACATT 7796 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | | || | ||| | | ||| || || | || ||||| || || ||||||||||| || Sbjct 7795 TTCAATAGTGTCACTCGGCTCCACCTCCAATGTGATGGTTTTACCGGTGAGGGTCTTGAC 7736 Query 34966 AAAGATCTGCAT 34977 ||||||||||| Sbjct 7735 GAAGATCTGCAT 7724 Score = 105 bits (116), Expect = 4e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 |||||||| || || ||||| || ||| | || | || || || |||||||| || ||| Sbjct 7002 TCCTTCTGGATATTGTAGTCTGACAGGGTACGGCCGTCCTCGAGCTGCTTTCCAGCAAAG 6943 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 || || || ||||| ||| | || | || |||||||| | || ||| ||| ||| | Sbjct 6942 ATGAGACGCTGCTGATCTGGTGGGATACCTTCCTTGTCCTGGATCTTTGCTTTCACGTTT 6883 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | || | || ||| ||| || || | || |||||||| || ||||| ||||| || Sbjct 6882 TCGATGGTATCGCTGGGCTCTACCTCTAGTGTGATGGTCTTGCCAGTGAGCGTCTTCACG 6823 Query 34967 AAGATCTGCAT 34977 ||||||||||| Sbjct 6822 AAGATCTGCAT 6812 Score = 98.7 bits (108), Expect = 6e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||| ||||| ||||| ||||| || ||| | || | || || || |||||||| ||||| Sbjct 7459 CTCTTTCTGGATGTTGTAGTCTGACAGGGTACGGCCGTCCTCGAGCTGCTTTCCAGCGAA 7400 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||| || || ||||| ||| | || | ||||||||||| | || ||| || || Sbjct 7399 GATGAGACGCTGCTGATCTGGTGGGATACCCTCCTTGTCCTGGATCTTTGCCTTTACATT 7340 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | | || | ||| | | ||| || || | || ||||| || || || || ||||| || Sbjct 7339 TTCAATAGTGTCACTTGGCTCCACCTCCAGAGTGATGGTTTTGCCAGTTAGCGTCTTCAC 7280 Query 34966 AAAGATCTGCAT 34977 ||||||||||| Sbjct 7279 GAAGATCTGCAT 7268 >seq156656 Length=67780 Score = 95.1 bits (104), Expect = 8e-15 Identities = 82/102 (80%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 34762 CCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTC 34821 |||||| || || || | |||| ||||||||||||||| ||||| || ||| |||| | Sbjct 29879 CCTCAGTACAAGATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCTGACAGGGTGCGGCC 29820 Query 34822 ATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTC 34863 ||| ||||| ||||| || || |||||||| || |||||||| Sbjct 29819 ATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTC 29778 >seq133437 Length=111544 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 34781 GTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCG 34840 ||| |||| ||||||||||| ||||| || ||| | | |||| ||||| ||||| || Sbjct 106762 GTGGTCTCTTTCTGAATGTTGTAGTCAGACAGGGTTCTGCCATCCTCCAGCTGCTTGCCA 106703 Query 34841 GCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTG 34900 |||||||| || || ||||| | | | | | ||||| | ||| | || || || Sbjct 106702 GCGAAGATGAGACGCTGCTGATGTGGTTGGATACCCTCTTCGTCTTGGATCTTCGCCTTT 106643 Query 34901 ACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTC 34960 || | | || ||| | | ||| || || | || ||||| || || ||||||||| Sbjct 106642 ACATTTTCAATAATGTCACTTGGCTCCACCTCCAGTGTGATGGTTTTACCGGTGAGGGTC 106583 Query 34961 TTTACAAAGATCTGCAT 34977 || || ||||| ||||| Sbjct 106582 TTGACGAAGATTTGCAT 106566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323164022476949