Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq34585 129 6e-25 seq251981 100 3e-16 seq364598 96.9 3e-15 seq286747 93.3 4e-14 seq133437 89.7 5e-13 >seq34585 Length=75490 Score = 129 bits (142), Expect = 6e-25 Identities = 149/199 (75%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521 || ||||||||||| || ||||| || || || ||| ||||||||||||||| | Sbjct 7464 GTAGACTCTTTCTGGATGTTGTAGTCTGACAGGGT--ACGGCCGTCCTCGAGCTGCTTTC 7407 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | ||||| |||||||| || || ||||| || |||||||| ||||||| || Sbjct 7406 CAGCGAAGATGAGACGCTGCTGATCTGGTGGGATACCCTCCTTGTCCTGGATCTTTGCCT 7347 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | |||| ||||| | |||||||| || | |||| ||||||||| || || | Sbjct 7346 TTACATTTTCAATAGTGTCACTTGGCTCCACCTCCAGAGTGATGGTTTTGCCAGTTAGCG 7287 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 7286 TCTTCACGAAGATCTGCAT 7268 Score = 123 bits (136), Expect = 2e-23 Identities = 148/199 (74%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521 || ||||| ||||| |||||||| || || || ||| ||||||||||||||| | Sbjct 7236 GTTGACTCCTTCTGGATATTGTAGTCTGACAGGGT--ACGGCCGTCCTCGAGCTGCTTTC 7179 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | ||||| |||||||| || || ||||| || || ||||| ||||||| || Sbjct 7178 CAGCGAAGATGAGACGCTGCTGATCTGGTGGGATACCCTCTTTGTCTTGGATCTTTGCCT 7119 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | |||| ||||| | |||||||| || | |||| ||||||||| || || | Sbjct 7118 TTACATTTTCAATAGTGTCACTTGGCTCCACCTCAAGAGTGATGGTTTTGCCAGTGAGGG 7059 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 7058 TCTTGACGAAGATCTGCAT 7040 Score = 122 bits (134), Expect = 8e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||||||||| || ||||| || | || ||||||||||||||||| Sbjct 7920 GTGGACTCTTTCTGAATGTTGTAGTCAGATAGGGTTCTGCCATCCTCGAGCTGCTTGCCA 7861 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | ||||| |||||||| || || ||||| || || ||||| ||||||| ||| Sbjct 7860 GCGAAGATGAGACGCTGCTGATCTGGTGGGATACCCTCTTTGTCTTGGATCTTTGCCTTT 7801 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | |||| ||||| | |||||||| || | |||| |||||| ||||| || || Sbjct 7800 ACATTTTCAATAGTGTCACTCGGCTCCACCTCCAATGTGATGGTTTTACCGGTGAGGGTC 7741 Query 133644 TTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 7740 TTGACGAAGATCTGCAT 7724 Score = 118 bits (130), Expect = 1e-21 Identities = 147/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| |||||||| || || ||| | | | ||||| ||||||||||| Sbjct 6780 GTTGACTCCTTCTGGATATTGTAGTCAGACAGAGTGCGGCCA-TCCTCAAGCTGCTTGCC 6722 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | ||||| |||||||| || || ||||| ||||||||||| |||||| ||| Sbjct 6721 AGCGAAGATGAGTCGCTGCTGATCAGGTGGGATACCTTCCTTGTCCTGGATCTTGGCCTT 6662 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | |||| || || | || || || || | |||| ||| ||||| || ||||| Sbjct 6661 CACATTTTCAATGGTATCACTAGGTTCGACCTCAAGTGTGATGGTCTTGCCAGTGAGAGT 6602 Query 133643 TTTTACGAAAATCTGCATG 133661 ||| || || ||||||||| Sbjct 6601 TTTCACAAAGATCTGCATG 6583 Score = 111 bits (122), Expect = 2e-19 Identities = 145/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521 || || || ||||| |||||||| || || || ||| ||||||||||||||| | Sbjct 7008 GTTGATTCCTTCTGGATATTGTAGTCTGACAGGGT--ACGGCCGTCCTCGAGCTGCTTTC 6951 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||| |||||||| || || ||||| ||||||||||| ||||||| | Sbjct 6950 CAGCAAAGATGAGACGCTGCTGATCTGGTGGGATACCTTCCTTGTCCTGGATCTTTGCTT 6891 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | || | || ||| ||||||| || || | |||| ||| ||||| || || | Sbjct 6890 TCACGTTTTCGATGGTATCGCTGGGCTCTACCTCTAGTGTGATGGTCTTGCCAGTGAGCG 6831 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 6830 TCTTCACGAAGATCTGCAT 6812 Score = 105 bits (116), Expect = 6e-18 Identities = 144/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521 || ||||| ||||| |||||||| || || || ||| ||||||||||||||| | Sbjct 7692 GTCGACTCCTTCTGGATATTGTAGTCTGACAGGGT--ACGGCCGTCCTCGAGCTGCTTTC 7635 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||| |||||||| || || ||||| ||||||||||| ||||||| | Sbjct 7634 CTGCAAAGATGAGACGCTGCTGATCTGGCGGGATACCTTCCTTGTCCTGGATCTTTGCTT 7575 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | || | || || ||||||| || || | |||| ||| ||||| || || | Sbjct 7574 TCACATTTTCGATGGTATCACTGGGCTCTACCTCTAATGTGATGGTCTTGCCAGTGAGGG 7515 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || || |||||||| Sbjct 7514 TCTTCACAAAGATCTGCAT 7496 >seq251981 Length=36728 Score = 100 bits (110), Expect = 3e-16 Identities = 171/246 (70%), Gaps = 4/246 (2%) Strand=Plus/Plus Query 148237 TCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCA 148296 ||||||| | | |||| | | ||||| | ||| ||||| || | ||| ||||||| Sbjct 17332 TCAGGTCCTTCAGGAGATGCGGGTTCACAATCTGGAACTCTCCCGAGAGGACGCGCCTGG 17391 Query 148297 GATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCG 148356 || | |||||| || |||| || | |||||||||||||| | ||||| || || | Sbjct 17392 TGTAGATGTTGCTGGTGTACGGCTCGATGGACTCGTTGTTGCCGAGGATCTGGGCCGTGG 17451 Query 148357 TTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGC 148416 || || |||||| || | ||||| |||||| | ||| | || || | | Sbjct 17452 AGGCGGTCGGCATGGGAGCCAGGAGCAGACTGTTGCGGAGGCCGTGCTTCGCAATGTCGG 17511 Query 148417 GCTTCAGAGCCGCCCAGTCCCAGAG--CGGCGACGGTGTCACGTTCCACATGTCGTACTG 148474 |||||||||||||||||| ||| ||| | || || || ||||||||||||||| Sbjct 17512 CCTTCAGAGCCGCCCAGTCGTGGAGGTCGGTG--GGCGTGACACCCCACATGTCGTACTG 17569 Query 148475 CAGAAT 148480 || ||| Sbjct 17570 CAAAAT 17575 >seq364598 Length=45638 Score = 96.9 bits (106), Expect = 3e-15 Identities = 175/254 (69%), Gaps = 4/254 (2%) Strand=Plus/Minus Query 148229 GAGCTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCAC 148288 ||| || ||||||| | | |||| | ||||| | ||| ||||| || | ||| || Sbjct 3366 GAGATCCGTCAGGTCCTTCAGGAGATGAGGGTTCACGATCTGGAACTCTCCCGAGAGGAC 3307 Query 148289 GCGCCGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTG 148348 ||||| || | |||||| || |||| || | |||||||||||||| | ||||| Sbjct 3306 GCGCCTGGTGTAGATGTTGCTGGTGTACGGCTCGATAGACTCGTTGTTGCCAAGGATCTG 3247 Query 148349 CGCGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTT 148408 || || | || || |||||| || | ||||| |||||| | ||| | || Sbjct 3246 GGCAGTGGAAGCGGTCGGCATGGGAGCCAGGAGCAGACTGTTGCGGAGGCCGTGCTTGGC 3187 Query 148409 TATTTTGCGCTTCAGAGCCGCCCAGTCCCAGAG--CGGCGACGGTGTCACGTTCCACATG 148466 || | | |||||| ||||||||||| ||| ||| | || || ||| ||||||| Sbjct 3186 GATGTCGGCCTTCAGCGCCGCCCAGTCGTGGAGGTCGGTG--GGCGTGACGCCCCACATG 3129 Query 148467 TCGTACTGCAGAAT 148480 |||||||||| ||| Sbjct 3128 TCGTACTGCAAAAT 3115 >seq286747 Length=126893 Score = 93.3 bits (102), Expect = 4e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 148850 CTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCC 148909 |||||||||| | |||||| || ||||| | ||| || || || || ||||| ||| Sbjct 124248 CTCATCCGGGCTGGAGTACTCGACTATCTCCGTGCAGAGGTTACTACACTTGATGGTGCC 124189 Query 148910 CACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGG 148963 || ||||| ||| |||||||||| |||||| ||||||||||| |||||| || Sbjct 124188 CAGGTTCTGTTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTACACCATGTAGGG 124135 >seq133437 Length=111544 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||| ||||||||| || ||||| || || || ||||| ||||||||||| Sbjct 106762 GTGGTCTCTTTCTGAATGTTGTAGTCAGACAGGGTTCTGCCATCCTCCAGCTGCTTGCCA 106703 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | ||||| |||||||| | || |||| || || | ||| |||||| ||| Sbjct 106702 GCGAAGATGAGACGCTGCTGATGTGGTTGGATACCCTCTTCGTCTTGGATCTTCGCCTTT 106643 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | |||| |||| | |||||||| || | |||| |||||| ||||| || || Sbjct 106642 ACATTTTCAATAATGTCACTTGGCTCCACCTCCAGTGTGATGGTTTTACCGGTGAGGGTC 106583 Query 133644 TTTACGAAAATCTGCAT 133660 || ||||| || ||||| Sbjct 106582 TTGACGAAGATTTGCAT 106566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479571132844040