Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq34585 111 1e-19 seq133437 82.4 5e-11 >seq34585 Length=75490 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||| | ||| ||||| |||||| || |||||||| || || Sbjct 7495 ACCACCACGGAGACGAAGCACAAGATGAAGAGTAGACTCTTTCTGGATGTTGTAGTCTGA 7436 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || || |||| || | || ||||| || || || | ||||||||||||| | || Sbjct 7435 CAGGGTACGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCTGGTGG 7376 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||| || ||||| || || || | |||| || | ||||| |||| |||| Sbjct 7375 GATACCCTCCTTGTCCTGGATCTT-TGCCTTTACATTTTCAATAGTGTCACTTGGCTCCA 7317 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| ||||| || |||| ||| || || |||||||||||| Sbjct 7316 CCTCCAGAGTGATGGTTTTGCCAGTTAGCGTCTTCACGAAGATCTGCATA 7267 Score = 105 bits (116), Expect = 4e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| ||||| | ||| ||||| ||| || || || ||||| || || Sbjct 7723 ACCACCACGGAGACGCAACACGAGATGAAGAGTCGACTCCTTCTGGATATTGTAGTCTGA 7664 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || || |||| || | || ||||| ||||| || | ||||||||||||| |||| Sbjct 7663 CAGGGTACGGCCGTCCTCGAGCTGCTTTCCTGCAAAGATGAGACGCTGCTGATCTGGCGG 7604 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||| ||||| || || || || |||| || | ||| || || | || | Sbjct 7603 GATACCTTCCTTGTCCTGGATCTT-TGCTTTCACATTTTCGATGGTATCACTGGGCTCTA 7545 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| || || || || | || || ||||||||||||||| Sbjct 7544 CCTCTAATGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCATA 7495 Score = 102 bits (112), Expect = 5e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||| | ||| ||||| ||| || || || ||||| || || Sbjct 7267 ACCACCACGGAGACGAAGCACAAGATGAAGAGTTGACTCCTTCTGGATATTGTAGTCTGA 7208 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || || |||| || | || ||||| || || || | ||||||||||||| | || Sbjct 7207 CAGGGTACGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCTGGTGG 7148 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||| |||||||| || || || | |||| || | ||||| |||| |||| Sbjct 7147 GATACCCTCTTTGTCTTGGATCTT-TGCCTTTACATTTTCAATAGTGTCACTTGGCTCCA 7089 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| ||||| ||||| || || | || || || |||||||||||| Sbjct 7088 CCTCAAGAGTGATGGTTTTGCCAGTGAGGGTCTTGACGAAGATCTGCATA 7039 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| ||||| | ||| ||||| || || || || ||||| || || Sbjct 7039 ACCACCACGGAGACGCAACACAAGATGAAGAGTTGATTCCTTCTGGATATTGTAGTCTGA 6980 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || || |||| || | || ||||| ||||| || | ||||||||||||| | || Sbjct 6979 CAGGGTACGGCCGTCCTCGAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGATCTGGTGG 6920 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||| ||||| || || || || || | || | ||| ||||| | || | Sbjct 6919 GATACCTTCCTTGTCCTGGATCTT-TGCTTTCACGTTTTCGATGGTATCGCTGGGCTCTA 6861 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| || || || || | ||| || || |||||||||||| Sbjct 6860 CCTCTAGTGTGATGGTCTTGCCAGTGAGCGTCTTCACGAAGATCTGCATA 6811 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | || | ||| |||||| |||||| || |||||||| || || Sbjct 7950 CCACCACGGAGACGGAGAACAAGATGGAGAGTGGACTCTTTCTGAATGTTGTAGTCAGAT 7891 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || | | || || | || || || || || || | ||||||||||||| | || Sbjct 7890 AGGGTTCTGCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCTGGTGGG 7831 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||| |||||||| || || || | |||| || | ||||| || | ||||| Sbjct 7830 ATACCCTCTTTGTCTTGGATCTT-TGCCTTTACATTTTCAATAGTGTCACTCGGCTCCAC 7772 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | ||||| |||||||| || | || || || |||||||||||| Sbjct 7771 CTCCAATGTGATGGTTTTACCGGTGAGGGTCTTGACGAAGATCTGCATA 7723 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| ||||| | ||| || || ||| || || || ||||| || || Sbjct 6811 ACCACCACGGAGACGCAACACAAGATGAAGTGTTGACTCCTTCTGGATATTGTAGTCAGA 6752 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || || | || || || || || || | ||||||||||| | || Sbjct 6751 CAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGTCGCTGCTGATCAGGTGG 6692 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||| ||||| || || ||| |||| || | ||| || || | ||| | Sbjct 6691 GATACCTTCCTTGTCCTGGATCTTGGCCTTC-ACATTTTCAATGGTATCACTAGGTTCGA 6633 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | |||| ||||| || || || || | ||||| |||||||||||||| Sbjct 6632 CCTCAAGTGTGATGGTCTTGCCAGTGAGAGTTTTCACAAAGATCTGCAT 6584 >seq133437 Length=111544 Score = 82.4 bits (90), Expect = 5e-11 Identities = 147/212 (69%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||| | ||| |||||| ||||||| || |||||||| || || || || | | || || Sbjct 106775 CACAAGATGGAGAGTGGTCTCTTTCTGAATGTTGTAGTCAGACAGGGTTCTGCCATCCTC 106716 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 || || || || || || || | ||||||||||| | | | | ||| |||| ||| Sbjct 106715 CAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATGTGGTTGGATACCCTCTTCGTCTTG 106656 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 || ||| | | |||| || | |||| |||| ||||| || | ||||| |||| Sbjct 106655 GATCTTC-GCCTTTACATTTTCAATAATGTCACTTGGCTCCACCTCCAGTGTGATGGTTT 106597 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 |||| || | || || || ||||| |||||| Sbjct 106596 TACCGGTGAGGGTCTTGACGAAGATTTGCATA 106565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 326151842608320