Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq34585 104 2e-17 seq259514 95.1 1e-14 seq373107 89.7 5e-13 seq156656 89.7 5e-13 seq162913 86.0 6e-12 >seq34585 Length=75490 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | |||||| | ||| | || |||||| || || ||||| || | | Sbjct 6810 CCACCACGGAGACGCAACACAAGATGAAGTGTTGACTCCTTCTGGATATTGTAGTCAGAC 6751 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || || |||||||| || || || || | |||||||| || | || Sbjct 6750 AGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGTCGCTGCTGATCAGGTGGG 6691 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||||||| |||||| ||||| | || | | || || || | ||| ||| Sbjct 6690 ATACCTTCCTTGTCCTGGATCTTGGCCTTCACATTTTCAATGGTATCACTAGGTTCGACC 6631 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| || || || || | |||||||||||| |||||||| Sbjct 6630 TCAAGTGTGATGGTCTTGCCAGTGAGAGTTTTCACAAAGATCTGCAT 6584 Score = 98.7 bits (108), Expect = 9e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || ||||||||||| || | | ||||| | || || |||||||| || || || Sbjct 7915 CTCTTTCTGAATGTTGTAGTCAGATAGGGTTCTGCCATCCTCGAGCTGCTTGCCAGCGAA 7856 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | |||||||| || | || | | ||| ||||| ||||||| ||| | | | Sbjct 7855 GATGAGACGCTGCTGATCTGGTGGGATACCCTCTTTGTCTTGGATCTTTGCCTTTACATT 7796 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||||| |||| |||||||||| ||||| |||||||| || | || || || Sbjct 7795 TTCAATAGTGTCACTCGGCTCCACCTCCAATGTGATGGTTTTACCGGTGAGGGTCTTGAC 7736 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 7735 GAAGATCTGCAT 7724 >seq259514 Length=44100 Score = 95.1 bits (104), Expect = 1e-14 Identities = 92/116 (79%), Gaps = 2/116 (2%) Strand=Plus/Minus Query 44306 AGGATGTATGTGGTCCATTTGCGGTGTCCACGAC-AGGGCGTGGCGAGAGCTACCCATCT 44364 ||| |||||||||||||||||||| | || ||| ||||| |||| ||| |||||| | Sbjct 34647 AGGTTGTATGTGGTCCATTTGCGGCATTCATGACCAGGGCTGGGCG-GAGAGACCCATTT 34589 Query 44365 ACGGCAAAGTGCGCTACATGAACTACAACGGTTGCGTCAGAAAGTTTGATGTAAAA 44420 |||||| | |||||||||||||||||||| ||| | |||||||| ||| || Sbjct 34588 TCGGCAAGATCCGCTACATGAACTACAACGGATGCAAACGGAAGTTTGACGTACAA 34533 >seq373107 Length=46510 Score = 89.7 bits (98), Expect = 5e-13 Identities = 91/116 (78%), Gaps = 2/116 (2%) Strand=Plus/Plus Query 44306 AGGATGTATGTGGTCCATTTGCGGTGTCCACGA-CAGGGCGTGGCGAGAGCTACCCATCT 44364 ||| || |||||||||||||| || | ||||| |||||| |||| ||| |||||| | Sbjct 33267 AGGTTGCATGTGGTCCATTTGTGGCATTCACGACCAGGGCTGGGCG-GAGAGACCCATTT 33325 Query 44365 ACGGCAAAGTGCGCTACATGAACTACAACGGTTGCGTCAGAAAGTTTGATGTAAAA 44420 |||||| | |||||||||||||||||||| ||| | |||||||| ||| || Sbjct 33326 TCGGCAAGATCCGCTACATGAACTACAACGGATGCAAACGGAAGTTTGACGTACAA 33381 >seq156656 Length=67780 Score = 89.7 bits (98), Expect = 5e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | ||||| || | ||| | || |||||| ||||||||||| || | | Sbjct 29890 CCACCACGGAGCCTCAGTACAAGATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCTGAC 29831 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || | || ||||||||||| || ||||| |||| ||||||||||| | |||| Sbjct 29830 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGA 29771 Query 35630 ACGC 35633 | || Sbjct 29770 ATGC 29767 >seq162913 Length=1277 Score = 86.0 bits (94), Expect = 6e-12 Identities = 90/116 (78%), Gaps = 2/116 (2%) Strand=Plus/Minus Query 44306 AGGATGTATGTGGTCCATTTGCGGTGTCCACGAC-AGGGCGTGGCGAGAGCTACCCATCT 44364 ||| || ||||||||||||||||| | |||||| ||||| |||| ||| ||| || | Sbjct 782 AGGTTGCATGTGGTCCATTTGCGGCATTCACGACCAGGGCTGGGCG-GAGAGACCAATTT 724 Query 44365 ACGGCAAAGTGCGCTACATGAACTACAACGGTTGCGTCAGAAAGTTTGATGTAAAA 44420 |||||| | || ||||||||||||||||| ||| | |||||||| ||| || Sbjct 723 TCGGCAAGATCCGATACATGAACTACAACGGATGCAAACGGAAGTTTGACGTACAA 668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447203755880680