Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq250674 309 4e-79 seq407716 122 1e-22 seq620319 113 6e-20 >seq250674 Length=71378 Score = 309 bits (342), Expect = 4e-79 Identities = 610/896 (68%), Gaps = 21/896 (2%) Strand=Plus/Minus Query 39317 ACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAAT 39376 || ||||||||||| ||||| ||||| ||| | || ||||||||||| ||||||||||| Sbjct 3687 ACACCCATTTTTTGATATTCCCCAACTCGTCTTTCAAAAAAATTAGTCTTGCCTTCCAAC 3628 Query 39377 GATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAAT 39436 || || |||||||| || ||||| ||||| ||||||| || | |||| | Sbjct 3627 GAAATGTTTTCCATAAAGTCAAATGGATTGTCAACATTATACACCTTATCGTATCCGAGC 3568 Query 39437 TCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCA---TTTCACAATTC 39493 || | | |||||| |||||||||||||| || | ||||| || | || Sbjct 3567 TCAAGTAGTAGTCTATCGGCAACAAATTCTATATACTGTCCCATCAGAGTTGCG---TTG 3511 Query 39494 ATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCC 39553 || || || || | | | || ||||||| || || ||||| || || || || Sbjct 3510 ATCCCGATTAGAGCGCATTGAAAGGCATCCGTTAAGAATTCCTTTTCAATCTCAACAGCT 3451 Query 39554 TCTGTTATTATCGATGTTACTACCTCATCACTCGG---TGG---ATGCAATAAATGTTTA 39607 || |||| | |||| | || | || | || ||| || || || || Sbjct 3450 TC----ATTAACCATGTGA-TAAAT-ATGAGACGTATCTGGTTTATTTTTTACATACTTG 3397 Query 39608 AACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAA 39667 | | | || || || |||||||| | |||||||| | ||| || | |||||| | | Sbjct 3396 TATAGGAGACACGCAAAATCACAATGCAATCCCTCATCGCGACTTATCAGTTCGTTGGCA 3337 Query 39668 AATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCA 39727 || || | || |||| | ||| | |||||| |||||||||||||||||||| | || Sbjct 3336 AACGTTAAACCGGGCAATTTACCTCTCTTTTTTAGCCAAAATATGGCAGCAAACGCACCC 3277 Query 39728 GAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTG---TA 39784 ||||| || |||||||| || | |||||||||||||| | || |||||| || Sbjct 3276 GAAAAAAAAATGCCTTCCACCACGGCAAATGCAACAAGGCGGGTACCAAAACTTGCTGTA 3217 Query 39785 TCATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCT 39844 | || | |||||| | |||||| | ||||| || | | ||| || ||| || Sbjct 3216 TTGTTGTCTATCCAGTCTAATGCCCATTTTGCTTTTTTTTGAATACACGGAATTTCCTCG 3157 Query 39845 ATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGA 39904 || ||||| | | || ||||||| | |||||| || || || || || | ||| Sbjct 3156 ATTGCATTTATCAAATGTTGTTTTTGTTTGGAATCTTTTACGTACGTTTCGATCAGCAGC 3097 Query 39905 CTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCT 39964 ||||||||| |||||||| ||||| || || ||||||||||| || || ||| || Sbjct 3096 GAATACATTTCGGAATGGATATTTTCCATGGCAATCTGAAATCCATAGAAGTATCGGACT 3037 Query 39965 TCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCA 40024 || | |||||| || || || ||| | | | |||||||| || || || |||||| Sbjct 3036 TCTGGAATTTGAACTTCACGACTAAAGCGTAGCATTAAATTTTCGTTTACAATACCATCA 2977 Query 40025 CTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTA 40084 || || |||||||| || || || | |||||||| | ||||||| || | | Sbjct 2976 CTGGCAGCAAAAAAGGCTAACACGTACAAAATAAAATGTCTTTCATCATCCGTGAGACCA 2917 Query 40085 TTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCT 40144 ||| || || | ||||| || | ||| |||||||| | |||||| || ||| || Sbjct 2916 AGCCAATCGTTTACGTCTTTAGACAAATCCACTTCTTCGGTAACCCAAAATGAGGCCACT 2857 Query 40145 GCCTTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCT 40200 || || || ||||| | ||||| ||| |||||| |||||| ||| |||||| || Sbjct 2856 GCTTTCTTATACATTTCCCATACATCGTGATATTTAATTGGATAAAGAACAAACCT 2801 >seq407716 Length=13296 Score = 122 bits (134), Expect = 1e-22 Identities = 161/223 (72%), Gaps = 3/223 (1%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||| ||||| || || | |||||| || || ||||||||||||||||| || | ||| | Sbjct 4584 CCTCGTCTCTGCTGATAAGTTCGTTGGAGAAGGTGAGTCCAGGCATTAGTCCCCTCTTCT 4643 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | | ||| || ||||||||||| || || || |||||||| || ||||| || ||||||| Sbjct 4644 TCAACCAGAAGATGGCAGCAAAGGAGCCTGAGAAGAAGATTCCCTCTACAGCAGCAAATG 4703 Query 39759 CAACAAGTCTCTCTCCGTAACTTGTATCATTATGT---ATCCACTTCTGTGCCCAATCAG 39815 | || | ||| ||| || | || | ||| ||||| || | ||||| | | Sbjct 4704 CGACTACCCTCGTCCCGAAATCAGCCTCGTCGTGTGCGATCCAGTTGAGCGCCCACTGTG 4763 Query 39816 CTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAG 39858 | ||||| ||||||| || | || || ||||| || || || Sbjct 4764 CCTTCTTGGTTACACACGGAAGAGTCTCGATAGCGTTGAACAG 4806 Score = 102 bits (112), Expect = 1e-16 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 39999 CCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAA 40058 ||| ||||||||| || || || ||||| || ||||| |||||||| || ||| || | Sbjct 6534 CCAGATTTTCATTGACGATGCCGTCACTGGCTGCAAAGAATGCCAAGACGTGTGAGATGA 6593 Query 40059 AATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTACTT 40118 | | || |||| |||| || ||| | | | ||| || || | || || | Sbjct 6594 AGTGCTTCTCATTCTTCGTCAGCTTTGCCCAATGTTCCAGATCCTTGGAGAGGTCGACCT 6653 Query 40119 CTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGATATT 40178 |||| || ||||| ||||||||||| || || |||||||||| ||| || || |||| | Sbjct 6654 CTTCCGCCGTCCAGAACGACGCCTCGGCTTTCTTGTACATGTGCCAGATGTCGTGATACT 6713 Query 40179 GTATTGGAAAAATAACAAATCTATTTGGATT 40209 | || || || || ||||| || |||| || Sbjct 6714 GGATGGGGAAGATGACAAACCTCCTTGGGTT 6744 >seq620319 Length=78974 Score = 113 bits (124), Expect = 6e-20 Identities = 159/223 (71%), Gaps = 3/223 (1%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||| ||||| || || | |||||| || || |||||||| |||||||| || | || | Sbjct 15680 CCTCGTCTCTGCTGATAAGTTCGTTGGAGAAGGTGAGTCCGGGCATTAGTCCCCTTTTCT 15621 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | | ||| || ||||||||||| || ||||| |||||||| || ||||| || ||||||| Sbjct 15620 TCAACCAGAAGATGGCAGCAAAGGAGCCAGAGAAGAAGATTCCCTCTACGGCGGCAAATG 15561 Query 39759 CAACAAGTCTCTCTCCGTAACTTGTATCATTATGT---ATCCACTTCTGTGCCCAATCAG 39815 |||| | || ||| || | | | ||| ||||| || | ||||| | | Sbjct 15560 CAACTACCCTTGTACCGAAATCAGCCTTGTCGTGTGCGATCCAGTTGAGCGCCCACTGTG 15501 Query 39816 CTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAG 39858 | ||||| ||||||| || | || || ||||| || || || Sbjct 15500 CCTTCTTGGTTACACACGGAAGAGTCTCGATAGCGTTGAACAG 15458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 681438679048440