Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq250674 347 1e-90 seq407716 104 2e-17 seq620319 95.1 1e-14 >seq250674 Length=71378 Score = 347 bits (384), Expect = 1e-90 Identities = 623/904 (69%), Gaps = 12/904 (1%) Strand=Plus/Plus Query 43687 AAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAA 43746 |||||| | |||||||| | | ||||||| ||||||| || ||||| ||||||| || Sbjct 2791 AAATCCTGCCAGGTTTGTTCTTTATCCAATTAAATATCACGATGTATGGGAAATGTATAA 2850 Query 43747 AAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACA 43806 |||||| ||| ||||||||| | |||||||| |||||| |||||||| || | Sbjct 2851 GAAAGCAGTGGCCTCATTTTGGGTTACCGAAGAAGTGGATTTGTCTAAAGACGTAAACGA 2910 Query 43807 TTGGATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGC 43866 |||| ||| | | | |||| ||||||||| | | || || || |||||||| Sbjct 2911 TTGGCTTGGTCTCACGGATGATGAAAGACATTTTATTTTGTACGTGTTAGCCTTTTTTGC 2970 Query 43867 TGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATT 43926 ||| || || || || || || |||||||| | || ||| | ||||||||| | Sbjct 2971 TGCCAGTGATGGTATTGTAAACGAAAATTTAATGCTACGCTTTAGTCGTGAAGTTCAAAT 3030 Query 43927 ACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAAT 43986 ||||||| |||| || ||||| ||||| |||||||| |||||||| ||||| ||||| Sbjct 3031 TCCAGAAGTCCGATACTTCTATGGATTTCAGATTGCCATGGAAAATATCCATTCCGAAAT 3090 Query 43987 GTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAA 44046 ||| || ||||| || |||||| | |||||| | | || || | ||| | || Sbjct 3091 GTATTCGCTGCTGATCGAAACGTACGTAAAAGATTCCAAACAAAAACAACATTTGATAAA 3150 Query 44047 TGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAA 44106 ||| || || | | || ||| || | |||||| | ||||| | | |||||| | Sbjct 3151 TGCAATCGAGGAAATTCCGTGTATTCAAAAAAAAGCAAAATGGGCATTAGACTGGATAGA 3210 Query 44107 TTCAAAT---GATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTT 44163 ||| | |||||| || ||||| || ||||| || |||||||||||||| Sbjct 3211 CAACAATACAGCAAGTTTTGGTACCCGCCTTGTTGCATTTGCCGTGGTGGAAGGCATTTT 3270 Query 44164 CTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTT 44223 ||||| || ||||||| |||||||||||| |||| || ||||| |||| || || Sbjct 3271 TTTTTCGGGTGCGTTTGCTGCCATATTTTGGCTAAAAAAGAGAGGTAAATTGCCCGGTTT 3330 Query 44224 GACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTG-CT 44282 |||||| | || || | |||||||| ||||| || || ||||| |||||||| || || Sbjct 3331 AACGTTTGCCAACGAACTGATAAGTCGCGATGAGGGATTGCATTGTGATTTTGCGTGTCT 3390 Query 44283 TGT-TACTTGGATATCTAGGAGACGATAAGCC-TTCATGTAAGACAATTACAGATATTGT 44340 | ||| | || | | | |||| || | || | | ||| | || || Sbjct 3391 CCTATACAAGTAT-----GTAAAAAATAAACCAGATACGTCTCATATTTA-TCACATGGT 3444 Query 44341 TGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAAT 44400 | || || || |||| ||| | ||||| | || || || | | |||| Sbjct 3445 TAATGAAGCTGTTGAGATTGAAAAGGAATTCTTAACGGATGCCTTTCAATGCGCTCTAAT 3504 Query 44401 AGGAATGAATGAACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTT 44460 || || || | | | ||||| || ||||| |||| |||| ||| | |||| | Sbjct 3505 CGGGATCAACGCAACTCTGATGGGACAGTATATAGAATTTGTTGCCGATAGACTACTACT 3564 Query 44461 GGAACTGGGTTGCGATAAACACTATATTGTACAAAACCCGTTTGATTTTATGGAAAATAT 44520 || || || | |||||| |||| ||| | || || ||||| ||||||||||| || Sbjct 3565 TGAGCTCGGATACGATAAGGTGTATAATGTTGACAATCCATTTGACTTTATGGAAAACAT 3624 Query 44521 TTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCAGCGAATGGG 44580 ||||||||||||||| || || |||||||||| ||| ||||| |||||||| |||||| Sbjct 3625 TTCGTTGGAAGGCAAGACTAATTTTTTTGAAAGACGAGTTGGGGAATATCAAAAAATGGG 3684 Query 44581 CGTC 44584 ||| Sbjct 3685 TGTC 3688 >seq407716 Length=13296 Score = 104 bits (114), Expect = 2e-17 Identities = 152/212 (72%), Gaps = 10/212 (5%) Strand=Plus/Minus Query 43697 AGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAG 43756 ||||||||| | || || || || ||||| ||||| ||||| |||||||| ||||| || Sbjct 6735 AGGTTTGTCATCTTCCCCATCCAGTATCACGACATCTGGCACATGTACAAGAAAGCCGAG 6676 Query 43757 GCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCA 43816 ||||| || ||||| || ||||| || || | | || || | | ||||||| ||| Sbjct 6675 GCGTCGTTCTGGACGGCGGAAGAGGTCGACCTCTCCAAGGATCTGGAACATTGG---GCA 6619 Query 43817 TTAAAACCAC-AAGAA----AAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGA 43871 || || ||||| || || || || || || ||||| || ||||| || | Sbjct 6618 --AAGCTGACGAAGAATGAGAAGCACTTCATCTCACACGTCTTGGCATTCTTTGCAGCCA 6561 Query 43872 GCGACGGGATAGTCAATGAAAATTTGGTTAGT 43903 | ||||| || |||||||||||| |||| ||| Sbjct 6560 GTGACGGCATCGTCAATGAAAATCTGGTGAGT 6529 >seq620319 Length=78974 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/212 (71%), Gaps = 10/212 (5%) Strand=Plus/Plus Query 43697 AGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAG 43756 ||||| ||| | || || || || ||||| ||||| ||||| |||||||| ||||| || Sbjct 13499 AGGTTCGTCATCTTCCCCATCCAGTATCACGACATCTGGCACATGTACAAGAAAGCCGAG 13558 Query 43757 GCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCA 43816 || || || |||||||| ||||| || || | | || || | | ||||||| ||| Sbjct 13559 GCATCGTTCTGGACAGCGGAAGAGGTCGACCTCTCCAAGGATCTGGAACATTGG---GCA 13615 Query 43817 TTAAAACCAC-AAGAA----AAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGA 43871 || || ||||| || || || || || || ||||| || || || || | Sbjct 13616 --AAGCTGACGAAGAATGAGAAGCACTTCATCTCACATGTCTTGGCATTCTTCGCAGCAA 13673 Query 43872 GCGACGGGATAGTCAATGAAAATTTGGTTAGT 43903 | ||||| || |||||||||||| |||| ||| Sbjct 13674 GTGACGGCATCGTCAATGAAAATCTGGTGAGT 13705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394370031261355