Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq34585 109 5e-19 seq250674 84.2 2e-11 >seq34585 Length=75490 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| ||||| || || |||||||| || | | || |||| |||||||| || || Sbjct 7464 GTAGACTCTTTCTGGATGTTGTAGTCTGACAGGGTACGGCCGTCCTCGAGCTGCTTTCCA 7405 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| ||||| || || | |||||| || || |||||| || Sbjct 7404 GCGAAGATGAGACGCTGCTGATCTGGTGGGATACCCTCCTTGTCCTGGATCTTTGCCTTT 7345 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | |||| | |||||| | | || || || ||||| || | |||||| || || || Sbjct 7344 ACATTTTCAATAGTGTCACTTGGCTCCACCTCCAGAGTGATGGTTTTGCCAGTTAGCGTC 7285 Query 27231 TTCACAAAGATTTGCATA 27248 ||||| ||||| |||||| Sbjct 7284 TTCACGAAGATCTGCATA 7267 Score = 105 bits (116), Expect = 6e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 ||||| || | ||| | || || || || || ||||||||||| || | | || || Sbjct 7026 CGCAACACAAGATGAAGAGTTGATTCCTTCTGGATATTGTAGTCTGACAGGGTACGGCCG 6967 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 || |||||||| || || || | ||||||||||| ||||| || || | ||| || || Sbjct 6966 TCCTCGAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGATCTGGTGGGATACCTTCCTTG 6907 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || |||||| ||||| | |||| | || || ||| || || ||||| || || Sbjct 6906 TCCTGGATCTTTGCTTTCACGTTTTCGATGGTATCGCTGGGCTCTACCTCTAGTGTGATG 6847 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | ||||| || || || ||||| ||||| |||||| Sbjct 6846 GTCTTGCCAGTGAGCGTCTTCACGAAGATCTGCATA 6811 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || ||||||||||| || | | || |||| |||||||| || || Sbjct 7236 GTTGACTCCTTCTGGATATTGTAGTCTGACAGGGTACGGCCGTCCTCGAGCTGCTTTCCA 7177 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| ||||| || || | ||||||||| || |||||| || Sbjct 7176 GCGAAGATGAGACGCTGCTGATCTGGTGGGATACCCTCTTTGTCTTGGATCTTTGCCTTT 7117 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | |||| | |||||| | | || || || ||||| || | |||||| || || || Sbjct 7116 ACATTTTCAATAGTGTCACTTGGCTCCACCTCAAGAGTGATGGTTTTGCCAGTGAGGGTC 7057 Query 27231 TTCACAAAGATTTGCATA 27248 || || ||||| |||||| Sbjct 7056 TTGACGAAGATCTGCATA 7039 Score = 105 bits (116), Expect = 6e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 ||||| || | ||| | || || || || || ||||||||||| || | | || || Sbjct 7710 CGCAACACGAGATGAAGAGTCGACTCCTTCTGGATATTGTAGTCTGACAGGGTACGGCCG 7651 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 || |||||||| || || || | ||||||||||| ||||| ||||| | ||| || || Sbjct 7650 TCCTCGAGCTGCTTTCCTGCAAAGATGAGACGCTGCTGATCTGGCGGGATACCTTCCTTG 7591 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || |||||| ||||| |||| | || || ||| || || |||| || || Sbjct 7590 TCCTGGATCTTTGCTTTCACATTTTCGATGGTATCACTGGGCTCTACCTCTAATGTGATG 7531 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | ||||| || || || ||||||||||| |||||| Sbjct 7530 GTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCATA 7495 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 ||||| || | ||| | || || || || || ||||||||||| || |||| | Sbjct 6798 CGCAACACAAGATGAAGTGTTGACTCCTTCTGGATATTGTAGTCAGACAGAGTGCGGCCA 6739 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 || || ||||| || || ||| | ||||| ||||| ||||| || || | ||| || || Sbjct 6738 TCCTCAAGCTGCTTGCCAGCGAAGATGAGTCGCTGCTGATCAGGTGGGATACCTTCCTTG 6679 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||||||| |||| |||| | || || | | ||| || || || || || Sbjct 6678 TCCTGGATCTTGGCCTTCACATTTTCAATGGTATCACTAGGTTCGACCTCAAGTGTGATG 6619 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||||| || ||||||||||||||||| ||||| Sbjct 6618 GTCTTGCCAGTGAGAGTTTTCACAAAGATCTGCAT 6584 Score = 86.0 bits (94), Expect = 5e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 || || ||||| ||||| |||||||| | | ||| || | || |||||||| || || Sbjct 7920 GTGGACTCTTTCTGAATGTTGTAGTCAGATAGGGTTCTGC-CATCCTCGAGCTGCTTGCC 7862 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 ||| | ||||||||||| ||||| || || | ||||||||| || |||||| || Sbjct 7861 AGCGAAGATGAGACGCTGCTGATCTGGTGGGATACCCTCTTTGTCTTGGATCTTTGCCTT 7802 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | |||| | |||||| | | || || || | || || | ||| || || || || Sbjct 7801 TACATTTTCAATAGTGTCACTCGGCTCCACCTCCAATGTGATGGTTTTACCGGTGAGGGT 7742 Query 27230 TTTCACAAAGATTTGCATA 27248 || || ||||| |||||| Sbjct 7741 CTTGACGAAGATCTGCATA 7723 >seq250674 Length=71378 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 108568 CAATGTAATCCTTCGTCGCGACTTATGAGCTCGTTACTGAACGTCAAACCCGGCATAATA 108627 ||||| ||||| || ||||||||||| || ||||| ||||| ||||| |||| || Sbjct 3375 CAATGCAATCCCTCATCGCGACTTATCAGTTCGTTGGCAAACGTTAAACCGGGCAATTTA 3316 Query 108628 CCTTTCGTTTTAATGTAAAATATTGCCGCAAAACTGCCGGaaaaaaaTATTCCCTCGACA 108687 ||| || |||| | ||||||| || ||||| || |||||||| || || || || Sbjct 3315 CCTCTCTTTTTTAGCCAAAATATGGCAGCAAACGCACCCGAAAAAAAAATGCCTTCCACC 3256 Query 108688 ATTGCAAACGCAAC 108701 | ||||| ||||| Sbjct 3255 ACGGCAAATGCAAC 3242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421635080642952