Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_028107.1 Length=34064 Score E Sequences producing significant alignments: (Bits) Value seq556156 89.7 1e-13 >seq556156 Length=560 Score = 89.7 bits (98), Expect = 1e-13 Identities = 186/272 (68%), Gaps = 8/272 (3%) Strand=Plus/Minus Query 6164 GCCAGAGCCCTCTCGTACGGATTAAGGGGAGGACCCCAGGGCATGGGGTGAGTAAGGGCA 6223 || || || | |||||| || || || || |||||||| ||||||||| || || || Sbjct 271 GCAAGCGCGCGCTCGTATGGGTTGAGTGGGGGACCCCATGGCATGGGGGTGGTNAGCGCG 212 Query 6224 GAAGCGTACATGCCGC----AAATGTC-GTACA-CATAAAGAGGCTGGCGTAGAACGCCG 6277 || ||||||||| | | ||||||| ||| | | | | | |||| | || | || Sbjct 211 GAGGCGTACATGGCCCGACTAAATGTCCGTAAAACGTGAGGGGGCTCTCTGAGTATTCCA 152 Query 6278 ATGTAAGTAGGATAGCAGCGCCCGCCCCGAATGCTGGCCCTGACGTAATCGTACATCTCA 6337 | || || || ||||| | || || || |||||||| | ||||||||||| | || Sbjct 151 AGATATGTGGG-TAGCATCTTCCACCGCGGATGCTGGCGCGCACGTAATCGTATAGTTCG 93 Query 6338 TGGGACGGGGCCAAGAGGCCGCTCCCCAGGTGGGTTTTTTGGGGTTTCACGGCGCGGTAG 6397 || || || || | |||| || || |||| | | ||| | | | || ||| | Sbjct 92 TGCGAGGGAGCGAGGAGGTCGGGACCGAGGTTGCTACGGGCGGGCTGCTCTGCTCGG-AA 34 Query 6398 GCGATCTGTCGGAAGATGGCGTGGGAGTTGGA 6429 || ||||| | ||||||||| || |||||||| Sbjct 33 GCTATCTGCCTGAAGATGGCATGTGAGTTGGA 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 108059474841852