Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq286747 118 1e-21 seq251981 116 4e-21 seq364598 104 3e-17 seq496440 86.0 7e-12 seq320776 86.0 7e-12 >seq286747 Length=126893 Score = 118 bits (130), Expect = 1e-21 Identities = 153/209 (73%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 19493 TTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGATTTCCTCGAACTGCGCCT- 19551 || || |||||||||||||| ||||| |||||| || | || ||||| || |||| Sbjct 122504 TTTGCAATCTACCTCGAGCCCTGGCATGCGGACATCTTCGACTTCCTAGA-CTGCAAGAA 122562 Query 19552 GAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTCACGGCCTTGTGGATTCCGGA 19611 |||||| || | |||||| ||| || ||||| ||| ||| ||||| | || || Sbjct 122563 GAACCACGGGAAAGAGGAGCAGCGTGCCCGTGACCTTTTCTACGCCCTGTGGGTGCCCGA 122622 Query 19612 CCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCACCTGATGTGCCCGCACGAATG 19671 ||| |||||| ||| ||||||| | || | || ||| ||||||||||| |||||||| Sbjct 122623 CCTGTTCATGAAGAGGGTTGAGCAAGATGGCGATTGGACGCTGATGTGCCCCCACGAATG 122682 Query 19672 CCCTGGCCTACCCGACGTCTACGGCGAGG 19700 ||| || || | ||||| | || |||| Sbjct 122683 CCCAGGACTCGCAGACGTGTGGGGAGAGG 122711 Score = 114 bits (126), Expect = 1e-20 Identities = 144/195 (74%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 79324 AGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCC 79383 || || ||||| ||||| ||||||||||| ||| || | || | ||||||| ||| | Sbjct 122691 AGTCCTGGGCATTCGTGGGGGCACATCAGCGTCCAATCGCCATCTTGCTCAACCCTCTTC 122632 Query 79384 ATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCG 79443 ||||| ||||| || | ||||||||| ||| ||||| ||| |||| |||||| | Sbjct 122631 ATGAACAGGTCGGGCACCCACAGGGCGTAGAAAAGGTCACGGGCACGCTGCTCCTCTTTC 122572 Query 79444 CCCTGGTTC-AGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATA 79502 || |||||| |||| || || ||||| | |||||| || ||||| ||||| || || Sbjct 122571 CCGTGGTTCTTCTTGCAG-TCTAGGAAGTCGAAGATGTCCGCATGCCAGGGCTCGAGGTA 122513 Query 79503 GATGGCGAACGAACC 79517 ||| || || | ||| Sbjct 122512 GATTGCAAAGGCACC 122498 >seq251981 Length=36728 Score = 116 bits (128), Expect = 4e-21 Identities = 145/196 (74%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 79324 AGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCC 79383 || || ||||| || || ||||||||||| ||| || | || | ||| ||| ||| | Sbjct 21371 AGTCCTGGGCATTCATGGGGGCACATCAGCGTCCAATCGCCATCTTGCTCGACCCTCTTC 21430 Query 79384 ATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCG 79443 ||||| ||||| || | ||||||||| ||| ||||| ||| |||| |||||| | Sbjct 21431 ATGAACAGGTCGGGCACCCACAGGGCGTAGAAAAGGTCACGGGCACGCTGCTCCTCTTTC 21490 Query 79444 CCCTGGTTC-AGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATA 79502 || |||||| |||| || || ||||| | |||||| || ||||||||||| || || Sbjct 21491 CCGTGGTTCTTCTTGCAG-TCTAGGAAGTCGAAGATGTCCGCATGCCACGGCTCGAGGTA 21549 Query 79503 GATGGCGAACGAACCC 79518 ||| ||||| | |||| Sbjct 21550 GATTGCGAAAGCACCC 21565 Score = 113 bits (124), Expect = 5e-20 Identities = 152/209 (73%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 19493 TTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGATTTCCTCGAACTGCGCCT- 19551 ||||| |||||||||||||| ||||| |||||| || | || ||||| || |||| Sbjct 21558 TTCGCAATCTACCTCGAGCCGTGGCATGCGGACATCTTCGACTTCCTAGA-CTGCAAGAA 21500 Query 19552 GAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTCACGGCCTTGTGGATTCCGGA 19611 |||||| || | |||||| ||| || ||||| ||| ||| ||||| | || || Sbjct 21499 GAACCACGGGAAAGAGGAGCAGCGTGCCCGTGACCTTTTCTACGCCCTGTGGGTGCCCGA 21440 Query 19612 CCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCACCTGATGTGCCCGCACGAATG 19671 ||| |||||| ||| ||| ||| | || | || ||| ||||||||||| || ||||| Sbjct 21439 CCTGTTCATGAAGAGGGTCGAGCAAGATGGCGATTGGACGCTGATGTGCCCCCATGAATG 21380 Query 19672 CCCTGGCCTACCCGACGTCTACGGCGAGG 19700 ||| || || | ||||| | || |||| Sbjct 21379 CCCAGGACTCGCAGACGTGTGGGGAGAGG 21351 Score = 104 bits (114), Expect = 3e-17 Identities = 86/105 (82%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 20366 CACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCATGCCGACCGCCTCGACCGCCCAGATC 20425 ||||| || |||||| ||||| | || ||||||||||||||||| || ||||||||| Sbjct 17497 CACGGCCTCCGCAACAGTCTGCTCCTGGCTCCCATGCCGACCGCCTCCACGGCCCAGATC 17438 Query 20426 ATGGGGAACAACGAGGCTTTCGAGCCGTACACGACCAACATCTAC 20470 | || ||||||||| | ||||||||||||| | |||||||||| Sbjct 17437 CTCGGCAACAACGAGTCCATCGAGCCGTACACCAGCAACATCTAC 17393 Score = 98.7 bits (108), Expect = 1e-15 Identities = 103/134 (77%), Gaps = 1/134 (1%) Strand=Plus/Plus Query 78534 GTAGATGTTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGA 78593 |||||||||| | ||||||||||||| | ||||||||| || | ||||||||| || || Sbjct 17393 GTAGATGTTGCTGGTGTACGGCTCGATGGACTCGTTGTTGCCGAGGATCTGGGCCGTGGA 17452 Query 78594 GGCGGTCGGCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATCTCGAC 78653 ||||||||||||||| || | || ||| || || || || ||| || || ||| | Sbjct 17453 GGCGGTCGGCATGGGAGCCAGGAGCAGACTGTTGCGGAGGCCGTGCTTCGCAATGTCGGC 17512 Query 78654 CTTTAG-GCCGTCC 78666 ||| || |||| || Sbjct 17513 CTTCAGAGCCGCCC 17526 Score = 87.8 bits (96), Expect = 2e-12 Identities = 115/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 78221 CCTTCTTCCATCCGTACAGGTGCATACTCGACAGCTTGGCCAGACTCGGGTTCTCC-ATG 78279 ||| ||||||| | | | |||||| || | ||| ||| ||| | | ||| || | ||| Sbjct 15289 CCTCCTTCCATGCAAAGAAGTGCATGCTGGTCAGTTTG-CCATAGTTGGGCTCGGCTATG 15347 Query 78280 AAGATGTTGAGCGACTGGGACTGGTCGATGTACGCACCGCGGTCGGCCGCCATGTCGATG 78339 ||||||||| |||||| ||||||||||||||| || ||||| ||||| | ||| Sbjct 15348 TGGATGTTGAGGGACTGGCTCTGGTCGATGTACGCCCCCCGGTCAATGGCCATCTGGATC 15407 Query 78340 ACCGACTTTTGCGGAATCTCCCAGATGGTCCGGTAAA 78376 || | ||| || | |||||||| | |||| ||||| Sbjct 15408 ACAGTCTTCTGGGAGATCTCCCACACGGTCTTGTAAA 15444 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 79080 CTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCC 79139 ||| |||||||| || ||| | ||| || ||||| | ||| ||||||||||||| Sbjct 20616 CTCATCCGGGCTGGAGTACTCAACGATCTCCGTGCAGAGGTTACTGCACTTGATGGTGCC 20675 Query 79140 GATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCC 79199 | ||||| |||||||||||| ||| || |||||||||| |||||| || || || Sbjct 20676 CAGGTTCTGCTGGTTGCTCTTGCGGTTGCAATGGTCCTTGTAGACCATGTAGGGAGTACC 20735 Query 79200 GGTCTC 79205 ||||| Sbjct 20736 CGTCTC 20741 >seq364598 Length=45638 Score = 104 bits (114), Expect = 3e-17 Identities = 86/105 (82%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 20366 CACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCATGCCGACCGCCTCGACCGCCCAGATC 20425 ||||| || |||||| ||||| | || |||||||||||||| || || ||||||||| Sbjct 3193 CACGGCCTCCGCAACAGTCTGCTCCTGGCTCCCATGCCGACCGCTTCCACTGCCCAGATC 3252 Query 20426 ATGGGGAACAACGAGGCTTTCGAGCCGTACACGACCAACATCTAC 20470 | || ||||||||| || ||||||||||||| | |||||||||| Sbjct 3253 CTTGGCAACAACGAGTCTATCGAGCCGTACACCAGCAACATCTAC 3297 Score = 98.7 bits (108), Expect = 1e-15 Identities = 103/134 (77%), Gaps = 1/134 (1%) Strand=Plus/Minus Query 78534 GTAGATGTTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGA 78593 |||||||||| | ||||||||||||| || ||||||||| || | ||||||||| || || Sbjct 3297 GTAGATGTTGCTGGTGTACGGCTCGATAGACTCGTTGTTGCCAAGGATCTGGGCAGTGGA 3238 Query 78594 GGCGGTCGGCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATCTCGAC 78653 |||||||||||||| || | || ||| || || || || ||| | ||| ||| | Sbjct 3237 AGCGGTCGGCATGGGAGCCAGGAGCAGACTGTTGCGGAGGCCGTGCTTGGCGATGTCGGC 3178 Query 78654 CTTTAG-GCCGTCC 78666 ||| || |||| || Sbjct 3177 CTTCAGCGCCGCCC 3164 >seq496440 Length=42271 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/79 (85%), Gaps = 1/79 (1%) Strand=Plus/Minus Query 60340 TGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTTG 60399 |||| | || ||| |||| ||||||| ||||||||||||||| ||| |||||||||| | Sbjct 15232 TGAAAATCCGTTT-GACTTCATGGAGAACATCTCGTTGGAAGGCAAGTCCAACTTCTTCG 15174 Query 60400 AGAAGCGGGTCGGGGATTA 60418 ||||||||||||| || || Sbjct 15173 AGAAGCGGGTCGGCGAGTA 15155 >seq320776 Length=21916 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/79 (85%), Gaps = 1/79 (1%) Strand=Plus/Minus Query 60340 TGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTTG 60399 |||| | || ||| |||| ||||||| ||||||||||||||| ||| |||||||||| | Sbjct 9890 TGAAAATCCGTTT-GACTTCATGGAGAACATCTCGTTGGAAGGCAAGTCCAACTTCTTCG 9832 Query 60400 AGAAGCGGGTCGGGGATTA 60418 ||||||||||||| || || Sbjct 9831 AGAAGCGGGTCGGCGAGTA 9813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 544156684464240