Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq299002 116 4e-21 seq503474 105 7e-18 seq251981 104 3e-17 seq364598 98.7 1e-15 seq16512 98.7 1e-15 seq634962 93.3 5e-14 seq407716 89.7 6e-13 seq286747 89.7 6e-13 >seq299002 Length=16590 Score = 116 bits (128), Expect = 4e-21 Identities = 102/127 (80%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| |||||||| | ||| ||||| ||||| || || ||| | ||| || || || Sbjct 2823 GTGAAGATGTAACGGGGGCTGGCAGCGTCCTTTCCTCCGTGAAGTCTCGTTCCAAACTGA 2882 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| |||||| || ||||||||||||||| |||||||||||||||||||||||||| Sbjct 2883 CCAATCGGCTGCAGCAGGTTCAGGTTGTTGCTGCCCACAAAGTTTTGAGCCAAGTTGATG 2942 Query 117425 ATCGTAC 117431 || |||| Sbjct 2943 ATGGTAC 2949 Score = 93.3 bits (102), Expect = 5e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||||||||| |||| |||||| || ||||| || || || | |||||||||||| Sbjct 2823 GTGAAGATGTAACGGGGGCTGGCAGCGTCCTTTCCTCCGTGAAGTCTCGTTCCAAACTGA 2882 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATT 152144 ||| |||| || ||||| ||||||||| |||||| || || |||||||| || Sbjct 2883 CCAATCGGCTGCAGCAGGTTCAGGTTGTTGCTGCCCACAAAGTTTTGAGCCAAGTT 2938 >seq503474 Length=10840 Score = 105 bits (116), Expect = 7e-18 Identities = 94/118 (80%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| |||||||| | ||| ||||| ||||| || || ||| | || || || || Sbjct 1855 GTGAAGATGTAACGGGGGCTGGCAGCGTCCTTTCCTCCGTGAAGTCTGGTCCCAAACTGA 1796 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGA 117422 ||| |||||| || ||||||||||||||| |||||||||||| ||||||||||||| Sbjct 1795 CCAATCGGCTGCAGCAGGTTCAGGTTGTTGCTGCCCACAAAGTTCTGAGCCAAGTTGA 1738 Score = 89.7 bits (98), Expect = 6e-13 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||||||||| |||| |||||| || ||||| || || || | || |||||||| Sbjct 1855 GTGAAGATGTAACGGGGGCTGGCAGCGTCCTTTCCTCCGTGAAGTCTGGTCCCAAACTGA 1796 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| |||| || ||||| ||||||||| |||||| || ||||||||||| || | Sbjct 1795 CCAATCGGCTGCAGCAGGTTCAGGTTGTTGCTGCCCACAAAGTTCTGAGCCAAGTTGATG 1736 Query 152149 ATCGTGC 152155 || |||| Sbjct 1735 ATGGTGC 1729 >seq251981 Length=36728 Score = 104 bits (114), Expect = 3e-17 Identities = 84/102 (82%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537 ||||| |||||| |||||| |||| || ||||| ||||| || ||||| |||||| | Sbjct 17494 GGCCTCCGCAACAGTCTGCTCCTGGCTCCCATGCCGACCGCCTCCACGGCCCAGATCCTC 17435 Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTAC 55579 |||||||||||| | ||||||||||||| | |||||||||| Sbjct 17434 GGCAACAACGAGTCCATCGAGCCGTACACCAGCAACATCTAC 17393 Score = 93.3 bits (102), Expect = 5e-14 Identities = 160/227 (70%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 53570 TTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCT- 53628 ||||| |||||||||||||||||||| || ||||| | || || || || |||| Sbjct 21558 TTCGCAATCTACCTCGAGCCGTGGCATGCGGACATCTTCGACTTCCTAGA-CTGCAAGAA 21500 Query 53629 GAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TACAGCTCTGTGGATTCCGG 53687 ||| || || | || ||| ||| ||||||||| || ||| || |||||| | || | Sbjct 21499 GAACCACGGGAAAGAGGAGCAGCGTGCCCGTGACCTTTTCTAC-GCCCTGTGGGTGCCCG 21441 Query 53688 ACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGT 53747 |||| |||||| | | ||| ||| | || | || ||| ||||||||||| | || | Sbjct 21440 ACCTGTTCATGAAGAGGGTCGAGCAAGATGGCGATTGGACGCTGATGTGCCCCCATGAAT 21381 Query 53748 GCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGTAT 53794 |||| || ||| | || | || ||||| ||| | || ||||| Sbjct 21380 GCCCAGGACTCGCAGACGTGTGGGGAGAGGAATTTGAAGAACTGTAT 21334 >seq364598 Length=45638 Score = 98.7 bits (108), Expect = 1e-15 Identities = 83/102 (81%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537 ||||| |||||| |||||| |||| || ||||| ||||| || || || |||||| | Sbjct 3196 GGCCTCCGCAACAGTCTGCTCCTGGCTCCCATGCCGACCGCTTCCACTGCCCAGATCCTT 3255 Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTAC 55579 |||||||||||| | ||||||||||||| | |||||||||| Sbjct 3256 GGCAACAACGAGTCTATCGAGCCGTACACCAGCAACATCTAC 3297 >seq16512 Length=106028 Score = 98.7 bits (108), Expect = 1e-15 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 117303 GAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATT 117362 ||||||| |||||||||| || || || |||||||| ||| ||| | || || || | Sbjct 68237 GAGTGAAGATGTAACGAGGACTAGCGGCGTCCTTGCCCCCATGAAGTCTGGTTCCAAACT 68178 Query 117363 GTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGA 117422 | ||| | |||| |||||| |||||||||||| ||| || ||| | || |||||||||| Sbjct 68177 GACCAATGGGCTGCAAGAGATTCAGGTTGTTGCTGCCGACGAAGGTCTGGGCCAAGTTGA 68118 Query 117423 CAATCGTAC 117431 || |||| Sbjct 68117 TGATGGTAC 68109 >seq634962 Length=97190 Score = 93.3 bits (102), Expect = 5e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 117303 GAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATT 117362 ||||||| |||||||||| || || || |||||||| || ||| | || || || | Sbjct 18814 GAGTGAAGATGTAACGAGGACTAGCGGCGTCCTTGCCTCCGTGAAGTCTGGTTCCAAACT 18755 Query 117363 GTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGA 117422 | ||| | |||| |||||| |||||||||||| ||| || ||| | || |||||||||| Sbjct 18754 GACCAATGGGCTGCAAGAGATTCAGGTTGTTGCTGCCGACGAAGGTCTGGGCCAAGTTGA 18695 Query 117423 CAATCGTAC 117431 || |||| Sbjct 18694 TGATGGTAC 18686 >seq407716 Length=13296 Score = 89.7 bits (98), Expect = 6e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 || |||||||| || | ||| || || || | || |||||||| ||||| | ||||||| Sbjct 4586 TCGTCTCTGCTGATAAGTTCGTTGGAGAAGGTGAGTCCAGGCATTAGTCCCCTCTTCTTC 4645 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 ||||| ||||||||| ||||| || ||||||||| || || ||| ||||| ||| Sbjct 4646 AACCAGAAGATGGCAGCAAAGGAGCCTGAGAAGAAGATTCCCTCTACAGCAGCAAATGCG 4705 Query 74892 AC 74893 || Sbjct 4706 AC 4707 >seq286747 Length=126893 Score = 89.7 bits (98), Expect = 6e-13 Identities = 159/227 (70%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 53570 TTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCT- 53628 || || |||||||||||||| ||||| || ||||| | || || || || |||| Sbjct 122504 TTTGCAATCTACCTCGAGCCCTGGCATGCGGACATCTTCGACTTCCTAGA-CTGCAAGAA 122562 Query 53629 GAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TACAGCTCTGTGGATTCCGG 53687 ||| || || | || ||| ||| ||||||||| || ||| || |||||| | || | Sbjct 122563 GAACCACGGGAAAGAGGAGCAGCGTGCCCGTGACCTTTTCTAC-GCCCTGTGGGTGCCCG 122621 Query 53688 ACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGT 53747 |||| |||||| | | ||| ||| | || | || ||| ||||||||||| |||| | Sbjct 122622 ACCTGTTCATGAAGAGGGTTGAGCAAGATGGCGATTGGACGCTGATGTGCCCCCACGAAT 122681 Query 53748 GCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGTAT 53794 |||| || ||| | || | || ||||| ||| | || ||||| Sbjct 122682 GCCCAGGACTCGCAGACGTGTGGGGAGAGGAATTTGAAGAACTGTAT 122728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542858306945800