Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq34585 206 3e-48 seq133437 149 7e-31 seq503474 104 3e-17 seq156656 100 3e-16 seq269770 95.1 1e-14 seq299002 86.0 7e-12 seq286747 82.4 9e-11 >seq34585 Length=75490 Score = 206 bits (228), Expect = 3e-48 Identities = 182/227 (80%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || |||||||| || |||||||| || || || ||||| ||| | | Sbjct 6812 ATGCAGATCTTCGTGAAGACGCTCACTGGCAAGACCATCACACTAGAGGTAGAGCCCAGC 6871 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | ||| |||| || || || ||||||||||| || || || ||||| ||| Sbjct 6872 GATACCATCGAAAACGTGAAAGCAAAGATCCAGGACAAGGAAGGTATCCCACCAGATCAG 6931 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || |||||||| ||||| |||||||| | |||||||| ||||||| ||| Sbjct 6932 CAGCGTCTCATCTTTGCTGGAAAGCAGCTCGAGGACGGCCGTACCCTGTCAGACTACAAT 6991 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| |||||||| ||||||||||| || |||||||| || ||||| Sbjct 6992 ATCCAGAAGGAATCAACTCTTCATCTTGTGTTGCGTCTCCGTGGTGG 7038 Score = 203 bits (224), Expect = 4e-47 Identities = 181/227 (80%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || || | ||||| ||| | || Sbjct 7496 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACATTAGAGGTAGAGCCCAGT 7555 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | |||| |||| || || || ||||||||||| || || || ||||| ||| Sbjct 7556 GATACCATCGAAAATGTGAAAGCAAAGATCCAGGACAAGGAAGGTATCCCGCCAGATCAG 7615 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || ||||| || ||||| |||||||| | |||||||| ||||||| ||| Sbjct 7616 CAGCGTCTCATCTTTGCAGGAAAGCAGCTCGAGGACGGCCGTACCCTGTCAGACTACAAT 7675 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || ||||||||||| || |||||||| || ||||| Sbjct 7676 ATCCAGAAGGAGTCGACTCTTCATCTCGTGTTGCGTCTCCGTGGTGG 7722 Score = 197 bits (218), Expect = 2e-45 Identities = 180/227 (79%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || ||||| || || ||||||||||| ||| || || Sbjct 7040 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAAACCATCACTCTTGAGGTGGAGCCAAGT 7099 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| |||| | ||||| || || || ||||| ||||| || || ||||| ||| Sbjct 7100 GACACTATTGAAAATGTAAAGGCAAAGATCCAAGACAAAGAGGGTATCCCACCAGATCAG 7159 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || ||||| ||||| |||||||| | |||||||| ||||||| ||| Sbjct 7160 CAGCGTCTCATCTTCGCTGGAAAGCAGCTCGAGGACGGCCGTACCCTGTCAGACTACAAT 7219 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || ||||||||||| || | ||||| || ||||| Sbjct 7220 ATCCAGAAGGAGTCAACTCTTCATCTTGTGCTTCGTCTCCGTGGTGG 7266 Score = 194 bits (214), Expect = 2e-44 Identities = 179/227 (79%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || |||||||| || ||||| || || ||||| ||||| ||| || || Sbjct 7268 ATGCAGATCTTCGTGAAGACGCTAACTGGCAAAACCATCACTCTGGAGGTGGAGCCAAGT 7327 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| |||| | ||||| || || |||||||||||||| || || ||||| ||| Sbjct 7328 GACACTATTGAAAATGTAAAGGCAAAGATCCAGGACAAGGAGGGTATCCCACCAGATCAG 7387 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || ||||| ||||| |||||||| | |||||||| ||||||| || Sbjct 7388 CAGCGTCTCATCTTCGCTGGAAAGCAGCTCGAGGACGGCCGTACCCTGTCAGACTACAAC 7447 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || || ||||||||||| || | ||||| || ||||| Sbjct 7448 ATCCAGAAAGAGTCTACTCTTCATCTTGTGCTTCGTCTCCGTGGTGG 7494 Score = 185 bits (204), Expect = 1e-41 Identities = 179/230 (78%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| |||||||| || || || || |||||||| || || |||||||| || | Sbjct 6581 ATCATGCAGATCTTTGTGAAAACTCTCACTGGCAAGACCATCACACTTGAGGTCGAACCT 6640 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 |||||| ||||| |||| ||||||| || || ||||||||||| || || || || || Sbjct 6641 AGTGATACCATTGAAAATGTGAAGGCCAAGATCCAGGACAAGGAAGGTATCCCACCTGAT 6700 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 |||||||| || || || ||||| ||||| || ||||||| || || || | ||||| Sbjct 6701 CAGCAGCGACTCATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACTCTGTCTGACTAC 6760 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||| |||| ||||| || || |||||||| || |||||||| || ||||| Sbjct 6761 AATATCCAGAAGGAGTCAACACTTCATCTTGTGTTGCGTCTCCGTGGTGG 6810 Score = 163 bits (180), Expect = 3e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || ||||| || || || || | ||||| ||| | || Sbjct 7724 ATGCAGATCTTCGTCAAGACCCTCACCGGTAAAACCATCACATTGGAGGTGGAGCCGAGT 7783 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| |||| | ||||| || || || ||||| ||||| || || ||||| ||| Sbjct 7784 GACACTATTGAAAATGTAAAGGCAAAGATCCAAGACAAAGAGGGTATCCCACCAGATCAG 7843 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || ||||| ||||| |||||||||| | |||||| | ||||| || Sbjct 7844 CAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGATGGCAGAACCCTATCTGACTACAAC 7903 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 | || || || |||||||| ||||| || | ||||| || ||||| || Sbjct 7904 ATTCAGAAAGAGTCCACTCTCCATCTTGTTCTCCGTCTCCGTGGTGGCCA 7953 Score = 104 bits (114), Expect = 3e-17 Identities = 168/228 (74%), Gaps = 18/228 (8%) Strand=Plus/Plus Query 27418 GTCAA-GACGCTTACCGGCAAGACT--ATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474 ||||| ||| ||||| ||||| || | ||||| ||||| ||| || |||| | ||| Sbjct 16024 GTCAACGACCCTTACTGGCAAAACGCAACCACTCTGGAGGTGGAGCCAAGTGACACTATT 16083 Query 27475 GCAAATTTGAAGGCTAAAA---TTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGT 27531 ||||| | ||||| || | | || ||||| ||||| || ||| | ||||| ||| Sbjct 16084 GCAAAAGTAAAGGCAAAGAGATTCCAAGACAATAAGGGATCACCACCA-ATCAGCA-CGT 16141 Query 27532 CTA----ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT-AATG 27586 || || || ||||| ||||| |||||| | | |||||||| |||||||| ||| Sbjct 16142 CTCCAATATCTTCGCTGGAAAGCAGCTCGAG-ACGGCCGTACCCT-GCAGACTAACAATA 16199 Query 27587 TCCAAAAGGAATCCACTCTTCATCTAGTCT-TGCGTCT-TCG-CGGTG 27631 ||||| |||| || ||||||||||| |||| | ||||| ||| ||||| Sbjct 16200 TCCAAGAGGAGTCAACTCTTCATCTTGTCTGTTCGTCTCTCGTCGGTG 16247 Score = 96.9 bits (106), Expect = 4e-15 Identities = 172/237 (73%), Gaps = 17/237 (7%) Strand=Plus/Plus Query 27409 CAAATCTTTGTCAAGACGCTTACCGG--CAA-GACTATTACTCTTGAGGTTGAGTCAGGT 27465 || ||||| || |||||||| || | ||| ||| || || || ||||| || |||| Sbjct 15773 CAGATCTTCGTGAAGACGCTCACTTGAGCAACGACCATCACACTAGAGGTAGAACCAGGC 15832 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAA-AT-TCAG---GACAAGGAGGGAATTCCT-CCA 27519 |||| ||| || | ||| || | | || |||| |||| ||| || || || ||| Sbjct 15833 GATACCATCCTAAGT--GAAAGCAAGAGATCTCAGCCGGACA-GGAAGGTATCCCAACCA 15889 Query 27520 GACCAGCAGCGTCTA--ATTTTTGCTGGTAAGCA-ACTCGAGGATGATCGTACCCTAGCA 27576 | ||||||||||| || |||||||| ||||| ||||||||| | || ||||| || Sbjct 15890 AATCAGCAGCGTCTCTCATCTTTGCTGGAAAGCAGACTCGAGGACGGCCG-ACCCTGTCA 15948 Query 27577 GACTATAATGTC-CAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||| ||| || || ||| | || ||||||||||| |||||||| || ||||| Sbjct 15949 GACTACAATATCTCAGAAGAATTCAACTCTTCATCTGTGTTTGCGTCTCCGTGGTGG 16005 >seq133437 Length=111544 Score = 149 bits (164), Expect = 7e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| || ||||| || || || || || ||||| ||| || || Sbjct 106566 ATGCAAATCTTCGTCAAGACCCTCACCGGTAAAACCATCACACTGGAGGTGGAGCCAAGT 106625 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| |||| | ||||| || || || ||| | ||||| || | ||| | ||| Sbjct 106626 GACATTATTGAAAATGTAAAGGCGAAGATCCAAGACGAAGAGGGTATCCAACCACATCAG 106685 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || ||||| ||||| || ||||||| | ||||| | ||||| || Sbjct 106686 CAGCGTCTCATCTTCGCTGGCAAGCAGCTGGAGGATGGCAGAACCCTGTCTGACTACAAC 106745 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 | || || || ||||||| ||||| || | | |||||| ||||| || Sbjct 106746 ATTCAGAAAGAGACCACTCTCCATCTTGTGCTCCATCTTCGTGGTGGCCA 106795 Score = 127 bits (140), Expect = 2e-24 Identities = 138/182 (76%), Gaps = 1/182 (1%) Strand=Plus/Plus Query 27451 GAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGA 27510 ||||| ||| | || |||| ||| | || || | | || || |||||||||||||| Sbjct 106384 GAGGTAGAGCCCGGCGATACCATCGAGAACGTGGAA-CAAAGATCCAGGACAAGGAGGGT 106442 Query 27511 ATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACC 27570 || || ||||| ||| ||||| | || |||||||| ||||| |||||||| | |||| | Sbjct 106443 ATCCCACCAGATCAGTAGCGTGTTATCTTTGCTGGCAAGCAGCTCGAGGACGGCCGTAAC 106502 Query 27571 CTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGT 27630 || || |||| ||| |||| ||| | || ||||||||||| || || ||||| || ||| Sbjct 106503 CTGTCAAACTACAATATCCAGAAGAAGTCAACTCTTCATCTTGTGTTACGTCTCCGAGGT 106562 Query 27631 GG 27632 || Sbjct 106563 GG 106564 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543 ||||| || || ||||||||| | | || | || || |||||||| || || |||||| Sbjct 105168 AAGGCCAAGATCCAGGACAAGAAACGTATCCTACCTGATCAGCAGCGACTCATCTTTGCT 105227 Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603 || ||||| || | ||| | ||||| | ||||||| ||| |||||||||| || ||| Sbjct 105228 GGAAAGCAGCTTGGGGACGGCCGTACTATGTCAGACTACAATATCCAAAAGGAGTCAACT 105287 Query 27604 CTTCATCTAGTCTT 27617 |||||||| || || Sbjct 105288 CTTCATCTCGTGTT 105301 >seq503474 Length=10840 Score = 104 bits (114), Expect = 3e-17 Identities = 99/127 (78%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 32123 GCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGC 32182 ||||||| ||||| | |||||||||||||| || || ||||||||| | || ||| Sbjct 1729 GCACCATCATCAACTTGGCTCAGAACTTTGTGGGCAGCAACAACCTGAACCTGCTGCAGC 1788 Query 32183 CATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACA 32242 | ||| |||||||||||| | || ||| || ||||| ||||| ||| ||||||||| Sbjct 1789 CGATTGGTCAGTTTGGGACCAGACTTCACGGAGGAAAGGACGCTGCCAGCCCCCGTTACA 1848 Query 32243 TCTTCAC 32249 ||||||| Sbjct 1849 TCTTCAC 1855 >seq156656 Length=67780 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || |||||||| |||||||||||||| || |||||||| ||||| || || |||| || Sbjct 29766 GGCATTCCTCCTGACCAGCAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGC 29825 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 ||||| ||||||| || | || ||||| ||||| || ||||| || || | || || Sbjct 29826 ACCCTGTCAGACTACAACATTCAGAAGGAGTCCACCCTCCATCTTGTACTGAGGCTCCGT 29885 Query 27628 GGTGG 27632 ||||| Sbjct 29886 GGTGG 29890 >seq269770 Length=105173 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || |||||||| |||||||||||||| || |||||||| ||||| || || |||| || Sbjct 71903 GGCATTCCTCCTGACCAGCAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGC 71962 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 || || ||||||| || |||| ||||| || || || ||||| || || | || || Sbjct 71963 ACGCTGTCAGACTACAACATCCAGAAGGAGTCAACCCTCCATCTCGTACTGAGGCTCCGT 72022 Query 27628 GGTGG 27632 ||||| Sbjct 72023 GGTGG 72027 >seq299002 Length=16590 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 32125 ACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCA 32184 ||||| ||||| | ||||| |||||||| || || ||||||||| | || |||| Sbjct 2947 ACCATCATCAACTTGGCTCAAAACTTTGTGGGCAGCAACAACCTGAACCTGCTGCAGCCG 2888 Query 32185 TCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATC 32244 ||| |||||||| || | || ||| || ||||| ||||| ||| ||||||||||| Sbjct 2887 ATTGGTCAGTTTGGAACGAGACTTCACGGAGGAAAGGACGCTGCCAGCCCCCGTTACATC 2828 Query 32245 TTCAC 32249 ||||| Sbjct 2827 TTCAC 2823 >seq286747 Length=126893 Score = 82.4 bits (90), Expect = 9e-11 Identities = 123/175 (70%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 81179 CTGGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGA 81238 ||||||| |||| ||||||||||| ||| ||| || | ||| || |||||||| Sbjct 122687 CTGGGCATTCGTGGGGGCACATCAGCGTCCAATCGCCATCTTGCTCAACCCTCTTCATGA 122628 Query 81239 AAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCT 81298 | ||| || | ||| |||||| ||| ||||| ||| ||| |||||| | || | Sbjct 122627 ACAGGTCGGGCACCCACAGGGCGTAGAAAAGGTCACGGGCACGCTGCTCCTCTTTCCCGT 122568 Query 81299 GGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATA 81353 |||| | || || ||||| | ||||||||||||||| ||||| || || Sbjct 122567 GGTTCTTCTTGCAGTCTAGGAAGTCGAAGATGTCCGCATGCCAGGGCTCGAGGTA 122513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565768797289520