Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq34585 104 1e-17 >seq34585 Length=75490 Score = 104 bits (114), Expect = 1e-17 Identities = 156/220 (71%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||| | ||| ||||| ||| || || ||||| || ||||| || || || Sbjct 7485 AGACGAAGCACAAGATGAAGAGTAGACTCTTTCTGGATGTTGTAGTCTGACAGGGTACGG 7426 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || || || || || || || || | |||||| || || || || | |||||| Sbjct 7425 CCGTCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCTGGTGGGATACCCTCC 7366 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGT--CTTCGCTCTCCACTTCCACGG 34666 ||||| ||||||| |||| | ||| |||| ||| | |||||| |||| | Sbjct 7365 TTGTCCTGGATCTTTGCCTTTACATTTTCAATAGTGTCACTTGG--CTCCACCTCCAGAG 7308 Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || ||||| || |||| ||| ||||| || |||||||| Sbjct 7307 TGATGGTTTTGCCAGTTAGCGTCTTCACGAAGATCTGCAT 7268 Score = 100 bits (110), Expect = 2e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | || | |||||||||| ||| || |||||||| || || || || |||| Sbjct 7941 AGACGGAGAACAAGATGGAGAGTGGACTCTTTCTGAATGTTGTAGTCAGATAGGGTTCTG 7882 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || || || || || | |||||| || || || || | ||||| Sbjct 7881 CCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCTGGTGGGATACCCTCT 7822 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCT-TCGCTCTCCACTTCCACGGT 34667 |||||| ||||||| |||| | ||| ||||| ||| |||||| |||| || Sbjct 7821 TTGTCTTGGATCTTTGCCTTTACATTTTCAATAGTGTCACTCGG-CTCCACCTCCAATGT 7763 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || ||||||||||| | || || || || |||||||| Sbjct 7762 GATGGTTTTACCGGTGAGGGTCTTGACGAAGATCTGCAT 7724 Score = 91.5 bits (100), Expect = 9e-14 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||||||| | ||| ||||| |||||| || || || || ||||| || || || Sbjct 7713 AGACGCAACACGAGATGAAGAGTCGACTCCTTCTGGATATTGTAGTCTGACAGGGTACGG 7654 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || || || || || ||||| || | |||||| || || ||||| | || ||| Sbjct 7653 CCGTCCTCGAGCTGCTTTCCTGCAAAGATGAGACGCTGCTGATCTGGCGGGATACCTTCC 7594 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTT 34668 ||||| ||||||| ||| | | || || || | ||| || || | || Sbjct 7593 TTGTCCTGGATCTTTGCTTTCACATTTTCGATGGTATCACTGGGCTCTACCTCTAATGTG 7534 Query 34669 ATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || | || |||||||| |||||||| Sbjct 7533 ATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 7496 Score = 86.0 bits (94), Expect = 4e-12 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||||||| | ||| ||||| ||||| || || || || ||||| || || || Sbjct 7029 AGACGCAACACAAGATGAAGAGTTGATTCCTTCTGGATATTGTAGTCTGACAGGGTACGG 6970 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || || || || || ||||| || | |||||| || || || || | || ||| Sbjct 6969 CCGTCCTCGAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGATCTGGTGGGATACCTTCC 6910 Query 34609 TTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| |||| ||| ||| | || || || | ||| || || | || Sbjct 6909 TTGTCCTGGATC-TTTGCTTTCACGTTTTCGATGGTATCGCTGGGCTCTACCTCTAGTGT 6851 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || | ||| ||||| || |||||||| Sbjct 6850 GATGGTCTTGCCAGTGAGCGTCTTCACGAAGATCTGCAT 6812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 312285944081543