Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq34585 105 6e-18 seq259514 82.4 7e-11 >seq34585 Length=75490 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || ||||| || | || || | || ||||| ||| Sbjct 7724 ATGCAGATCTTCGTCAAGACCCTCACCGGTAAAACCATCACATTGGAGGTGGAGCCGAGT 7783 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || ||| || ||||||||||| || || ||||| ||||| Sbjct 7784 GACACTATTGAAAATGTAAAGGCAAAGATCCAAGACAAAGAGGGTATCCCACCAGATCAG 7843 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| ||||| || | || || | ||| | || || |||||| Sbjct 7844 CAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGATGGCAGAACCCTATCTGACTACAAC 7903 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 ||||| || ||||| || | ||| | ||| | ||| | || |||||| Sbjct 7904 ATTCAGAAAGAGTCCACTCTCCATCTTGTTCTCCGTCTCCGTGGTGGC 7951 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || || ||||| | || |||||||| ||||| || Sbjct 7040 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAAACCATCACTCTTGAGGTGGAGCCAAGT 7099 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || ||| || ||||||||||| || || ||||| ||||| Sbjct 7100 GACACTATTGAAAATGTAAAGGCAAAGATCCAAGACAAAGAGGGTATCCCACCAGATCAG 7159 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| || || || | || ||| | ||| | || || ||||| Sbjct 7160 CAGCGTCTCATCTTCGCTGGAAAGCAGCTCGAGGACGGCCGTACCCTGTCAGACTACAAT 7219 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| || | ||| | || | ||| | || ||||| || Sbjct 7220 ATCCAGAAGGAGTCAACTCTTCATCTTGTGCTTCGTCTCCGTGGTGGTAT 7269 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || |||||| | || || | || || || || Sbjct 7496 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACATTAGAGGTAGAGCCCAGT 7555 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || ||| ||| || || ||||| ||||| || || || ||||| Sbjct 7556 GATACCATCGAAAATGTGAAAGCAAAGATCCAGGACAAGGAAGGTATCCCGCCAGATCAG 7615 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || || || || | || ||| | ||| | || || ||||| Sbjct 7616 CAGCGTCTCATCTTTGCAGGAAAGCAGCTCGAGGACGGCCGTACCCTGTCAGACTACAAT 7675 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||||||||| | ||| | || |||||| | || ||||| || Sbjct 7676 ATCCAGAAGGAGTCGACTCTTCATCTCGTGTTGCGTCTCCGTGGTGGTAT 7725 >seq259514 Length=44100 Score = 82.4 bits (90), Expect = 7e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 135506 GAAGGCAAAATGCACGGATTTATGCGCATGTATTGGGCAAAAAAGATATTGGAATGGTCT 135565 || || || |||||||||||| | |||||||| ||||| || ||||| | |||||| || Sbjct 39380 GAGGGTAAGATGCACGGATTTCTTCGCATGTACTGGGCCAAGAAGATCCTCGAATGGACT 39321 Query 135566 GCATCGCCTGCAGAGGCGCT 135585 |||||||| |||||||||| Sbjct 39320 GCATCGCCGACAGAGGCGCT 39301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 431544736997903