Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq34585 156 1e-32 seq133437 118 2e-21 seq156656 102 2e-16 seq269770 93.3 1e-13 >seq34585 Length=75490 Score = 156 bits (172), Expect = 1e-32 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965 ||||| ||||| || ||||| || ||||| || || || | || || | ||||| || Sbjct 6792 ACAAGATGAAGTGTTGACTCCTTCTGGATATTGTAGTCAGACAGAGTGCGGCCATCCTCA 6733 Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGG 211025 ||||||||||| |||||||| || || || || ||||| || | ||||||||||||||| Sbjct 6732 AGCTGCTTGCCAGCGAAGATGAGTCGCTGCTGATCAGGTGGGATACCTTCCTTGTCCTGG 6673 Query 211026 ATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTT 211085 ||||| ||||| ||||| ||||| ||| ||| ||||| || ||||| ||||| Sbjct 6672 ATCTTGGCCTTCACATTTTCAATGGTATCACTAGGTTCGACCTCAAGTGTGATGGTCTTG 6613 Query 211086 CCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || |||||||| || ||||| | |||||| Sbjct 6612 CCAGTGAGAGTTTTCACAAAGATCTGCAT 6584 Score = 156 bits (172), Expect = 1e-32 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965 || || |||||||| ||||| || ||||| || || || | ||||| | || || || Sbjct 7704 ACGAGATGAAGAGTCGACTCCTTCTGGATATTGTAGTCTGACAGGGTACGGCCGTCCTCG 7645 Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGG 211025 |||||||| ||||| ||||| || || || || || || || | ||||||||||||||| Sbjct 7644 AGCTGCTTTCCTGCAAAGATGAGACGCTGCTGATCTGGCGGGATACCTTCCTTGTCCTGG 7585 Query 211026 ATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTT 211085 |||||| |||||| ||||||||||| ||| | || ||||| | ||||| ||||| Sbjct 7584 ATCTTTGCTTTCACATTTTCGATGGTATCACTGGGCTCTACCTCTAATGTGATGGTCTTG 7525 Query 211086 CCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| ||||| | |||||| Sbjct 7524 CCAGTGAGGGTCTTCACAAAGATCTGCAT 7496 Score = 152 bits (168), Expect = 1e-31 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965 ||||| |||||||| || || || ||||| || || || | ||||| | || || || Sbjct 7020 ACAAGATGAAGAGTTGATTCCTTCTGGATATTGTAGTCTGACAGGGTACGGCCGTCCTCG 6961 Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGG 211025 |||||||| || || ||||| || || || || || || || | ||||||||||||||| Sbjct 6960 AGCTGCTTTCCAGCAAAGATGAGACGCTGCTGATCTGGTGGGATACCTTCCTTGTCCTGG 6901 Query 211026 ATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTT 211085 |||||| |||||||||||||||||| || | || ||||| || ||||| ||||| Sbjct 6900 ATCTTTGCTTTCACGTTTTCGATGGTATCGCTGGGCTCTACCTCTAGTGTGATGGTCTTG 6841 Query 211086 CCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| || || | |||||| Sbjct 6840 CCAGTGAGCGTCTTCACGAAGATCTGCAT 6812 Score = 145 bits (160), Expect = 2e-29 Identities = 162/215 (75%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| |||||||| |||||||| |||||||| || || | ||||| | || || Sbjct 7479 AGCACAAGATGAAGAGTAGACTCTTTCTGGATGTTGTAGTCTGACAGGGTACGGCCGTCC 7420 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || |||||||| || || || || || || || | || ||||||||| Sbjct 7419 TCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCTGGTGGGATACCCTCCTTGTCC 7360 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATC 211079 ||||||||| || || ||||| || |||||| ||| || ||||| |||||||| Sbjct 7359 TGGATCTTTGCCTTTACATTTTCAATAGTGTCA---CTTGGCTCCACCTCCAGAGTGATG 7303 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || || ||||| || || | |||||| Sbjct 7302 GTTTTGCCAGTTAGCGTCTTCACGAAGATCTGCAT 7268 Score = 140 bits (154), Expect = 7e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || |||||||||||||| || ||||| || || | ||||| || ||||| Sbjct 7935 AGAACAAGATGGAGAGTGGACTCTTTCTGAATGTTGTAGTCAGATAGGGTTCTGCCATCC 7876 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| || || || || || || || | || || ||||| Sbjct 7875 TCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCTGGTGGGATACCCTCTTTGTCT 7816 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||||||| || || ||||| || |||||| || ||||| | ||||| || Sbjct 7815 TGGATCTTTGCCTTTACATTTTCAATAGTGTCACTCGGCTCCACCTCCAATGTGATGGTT 7756 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| || || | |||||| Sbjct 7755 TTACCGGTGAGGGTCTTGACGAAGATCTGCAT 7724 >seq133437 Length=111544 Score = 118 bits (130), Expect = 2e-21 Identities = 156/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || ||||||| |||||| || ||||| || || | ||||| || ||||| Sbjct 106777 AGCACAAGATGGAGAGTGGTCTCTTTCTGAATGTTGTAGTCAGACAGGGTTCTGCCATCC 106718 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| || || || || | || | | || || | ||| Sbjct 106717 TCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATGTGGTTGGATACCCTCTTCGTCT 106658 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATC 211079 |||||||| || || ||||| || ||||| ||| || ||||| || ||||| Sbjct 106657 TGGATCTTCGCCTTTACATTTTCAATAATGTCA---CTTGGCTCCACCTCCAGTGTGATG 106601 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || ||||| ||||| || || | ||||| Sbjct 106600 GTTTTACCGGTGAGGGTCTTGACGAAGATTTGCAT 106566 Score = 98.7 bits (108), Expect = 2e-15 Identities = 112/149 (75%), Gaps = 1/149 (1%) Strand=Plus/Minus Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965 ||||| |||||||| |||| || ||||| || || | | ||| | | || || || Sbjct 106546 ACAAGATGAAGAGTTGACTTCTTCTGGATATTGTAGTTTGACAGGTTACGGCCGTCCTCG 106487 Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGG 211025 ||||||||||| || ||||||| || | || || || || | || |||||||||||| Sbjct 106486 AGCTGCTTGCCAGCAAAGATAACACGCTACTGATCTGGTGGGATACCCTCCTTGTCCTGG 106427 Query 211026 ATCTTTTGTTTCACGTTTTCGATGGTGTC 211054 ||| |||||| |||||| |||||||| || Sbjct 106426 ATC-TTTGTTCCACGTTCTCGATGGTATC 106399 >seq156656 Length=67780 Score = 102 bits (112), Expect = 2e-16 Identities = 92/116 (79%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| || || || ||||| || || |||||||| || || ||||| || || | ||||| Sbjct 29885 ACGGAGCCTCAGTACAAGATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCTGACAGGGT 29826 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAA 211008 | |||||||||||||||||||| || ||||| || || || ||||||||||||| Sbjct 29825 GCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGAA 29770 >seq269770 Length=105173 Score = 93.3 bits (102), Expect = 1e-13 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| || || || || || || || || ||||| || |||||||| || || | || || Sbjct 72022 ACGGAGCCTCAGTACGAGATGGAGGGTTGACTCCTTCTGGATGTTGTAGTCTGACAGCGT 71963 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAA 211008 | |||||||||||||||||||| || ||||| || || || ||||||||||||| Sbjct 71962 GCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGAA 71907 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1149690454038915