Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq34585 109 4e-19 >seq34585 Length=75490 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| || ||||| ||||| | || || || | | Sbjct 7724 ATGCAGATCTTCGTCAAGACCCTCACCGGTAAAACCATCACATTGGAGGTGGAGCCGAGT 7783 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| |||||| |||| ||| || |||||||| ||| | || |||||||| Sbjct 7784 GACACTATTGAAAATGTAAAGGCAAAGATCCAAGACAAAGAGGGTATCCCACCAGATCAG 7843 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || || ||||| || || || || | | || || || |||||| Sbjct 7844 CAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGATGGCAGAACCCTATCTGACTACAAC 7903 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || || ||||||||||| | ||| | ||| Sbjct 7904 ATTCAGAAAGAGTCCACTCTCCATCTTGTT 7933 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || |||||||| || || || ||||| | || || || ||| Sbjct 7496 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACATTAGAGGTAGAGCCCAGT 7555 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | |||| | ||| ||| || ||||| |||||| | ||||||||||| Sbjct 7556 GATACCATCGAAAATGTGAAAGCAAAGATCCAGGACAAGGAAGGTATCCCGCCAGATCAG 7615 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||| || || || || || |||| || || | || ||||| Sbjct 7616 CAGCGTCTCATCTTTGCAGGAAAGCAGCTCGAGGACGGCCGTACCCTGTCAGACTACAAT 7675 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 7676 ATCCAGAAGGAGTCGAC 7692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 335385191112068