Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq250674 329 3e-85 seq620319 107 2e-18 seq407716 98.7 8e-16 >seq250674 Length=71378 Score = 329 bits (364), Expect = 3e-85 Identities = 611/885 (69%), Gaps = 24/885 (3%) Strand=Plus/Minus Query 4248 ACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAAC 4307 ||||| | |||||| ||||| ||||| |||| || |||||||| |||||||| ||| Sbjct 3687 ACACCCATTTTTTGATATTCCCCAACTCGTCTTTCAAAAAAATTAGTCTTGCCTTCCAAC 3628 Query 4308 GAAATATTTTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGA 4367 ||||| ||||||||||| ||||| ||||| | || || || || | | || Sbjct 3627 GAAATGTTTTCCATAAAGTCAAATGGATTGTCAACATTATACACCTTATCGTA--TCCGA 3570 Query 4368 GCTACA--AGCAATCGGTCAGCTACAAATTCTATATACTGGCTCAT--GAGTTCGCAGTT 4423 ||| | || | || || || ||||||||||||||||| | ||| ||||| || ||| Sbjct 3569 GCTCAAGTAGTAGTCTATCGGCAACAAATTCTATATACTGTCCCATCAGAGTT-GC-GTT 3512 Query 4424 AATTCCAATTA-ATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGG 4482 || || |||| | | || | || || | || || || || | ||| || || | Sbjct 3511 GATCCCGATTAGAGCGCATTGAAAG-GCATCCGTTAAGAATTCCTTTTCAATCTCAACAG 3453 Query 4483 CTTCTGTGATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACA 4542 |||| | | || | | || | | || |||||||||| || || | | Sbjct 3452 CTTCATTAACCATGTGATAAATATGAGACGTATCTGGTTTATTTTTTACATACTTGTATA 3393 Query 4543 ATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACG 4602 | ||||||||||||||||||||| || || || | || ||||||||||| | ||||| Sbjct 3392 GGAGACACGCAAAATCACAATGCAATCCCTCATCGCGACTTATCAGTTCGTTGGCAAACG 3333 Query 4603 TTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAA 4662 |||| ||||||| | |||||||||||| ||||||||||| || ||||| | || |||| Sbjct 3332 TTAAACCGGGCAATTTACCTCTCTTTTTTAGCCAAAATATGGCAGCAAACGCACCCGAAA 3273 Query 4663 AGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGG-ACCCGAACGAGCTGGCT--T 4719 | || |||||||| || ||||||| || || | |||| ||| ||| |||| | | Sbjct 3272 AAAAAATGCCTTCCACCACGGCAAATGCAACAAGGCGGGTACCAAAACTTGCTGTATTGT 3213 Query 4720 TGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATA 4779 ||||| ||||| | ||||||||| || |||||||| | || ||||||||| | | Sbjct 3212 TGTCT---ATCCAGTCTAATGCCCATTTTGCTTTTTTTTGAATACACGGAATTTCCTCGA 3156 Query 4780 TAGCGTT----AAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGT 4835 | || || |||| | | || ||| || |||| | || || || || || Sbjct 3155 TTGCATTTATCAAATGTTGTTTTTGTTTGGAA----TCTTTTACGTACGTTTCGATCAGC 3100 Query 4836 AGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTA 4895 || ||||||||| ||||| |||||||| || |||||||||||||| || ||| ||| Sbjct 3099 AGCGAATACATTTCGGAATGGATATTTTCCATGGCAATCTGAAATCCATAGAAGTATCGG 3040 Query 4896 GCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCG 4955 |||||| | ||||||||| || ||| | | | ||| ||||||||||| ||||| Sbjct 3039 ACTTCTGGAATTTGAACTTCACGACTAAAGCGTAGCATTAAATTTTCGTTTACAATACCA 2980 Query 4956 TCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGT 5015 |||||||| |||||||| || || || | | ||||| | ||| ||| | | || Sbjct 2979 TCACTGGCAGCAAAAAAGGCTAACACGTACAAAATAAAATGTCTTTCATCATCCGTGAGA 2920 Query 5016 TTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCT 5075 ||| | | | ||||||| ||||| |||||||| | |||||| || || Sbjct 2919 CCAAGCCAATCGTTTACGTCTTTAGACAAATCCACTTCTTCGGTAACCCAAAATGAGGCC 2860 Query 5076 TCCGCTTTTTTGTACATAGACCAAATATCAGGATACTGAATCGGA 5120 | ||||| || ||||| ||| | ||| |||| | ||| ||| Sbjct 2859 ACTGCTTTCTTATACATTTCCCATACATCGTGATATTTAATTGGA 2815 >seq620319 Length=78974 Score = 107 bits (118), Expect = 2e-18 Identities = 157/220 (71%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 ||||||||||| || |||||||| || || || | ||||||||||| || || || || Sbjct 15678 TCGTCTCTGCTGATAAGTTCGTTGGAGAAGGTGAGTCCGGGCATTAGTCCCCTTTTCTTC 15619 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 | ||| || || || ||||| || ||||| ||||| || || |||||||||||||| || Sbjct 15618 AACCAGAAGATGGCAGCAAAGGAGCCAGAGAAGAAGATTCCCTCTACGGCGGCAAATGCA 15559 Query 4692 ACTAATCGGGACCCGAACGAGCTGGCT--TTGTCTTTAATCCATTTTAATGCCCAGTTAG 4749 |||| | | ||||| | | | || | || | ||||| || | ||||| | | Sbjct 15558 ACTACCCTTGTACCGAA--ATCAGCCTTGTCGTGTGCGATCCAGTTGAGCGCCCACTGTG 15501 Query 4750 CTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAA 4789 | || || | || ||||||| || | |||||||| || Sbjct 15500 CCTTCTTGGTTACACACGGAAGAGTCTCGATAGCGTTGAA 15461 >seq407716 Length=13296 Score = 98.7 bits (108), Expect = 8e-16 Identities = 155/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 ||||||||||| || |||||||| || || || | ||| ||||||| || ||||| || Sbjct 4586 TCGTCTCTGCTGATAAGTTCGTTGGAGAAGGTGAGTCCAGGCATTAGTCCCCTCTTCTTC 4645 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 | ||| || || || ||||| || || || ||||| || || ||||| || ||||| || Sbjct 4646 AACCAGAAGATGGCAGCAAAGGAGCCTGAGAAGAAGATTCCCTCTACAGCAGCAAATGCG 4705 Query 4692 ACTAATCGGGACCCGAACGAGCTGGCT--TTGTCTTTAATCCATTTTAATGCCCAGTTAG 4749 |||| | | |||||| | | | || | || | ||||| || | ||||| | | Sbjct 4706 ACTACCCTCGTCCCGAA--ATCAGCCTCGTCGTGTGCGATCCAGTTGAGCGCCCACTGTG 4763 Query 4750 CTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAA 4789 | || || | || ||||||| || | |||||||| || Sbjct 4764 CCTTCTTGGTTACACACGGAAGAGTCTCGATAGCGTTGAA 4803 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 4938 TTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTAC 4997 ||||| || || || ||||||||||||||||| || ||||| || || || || |||| | Sbjct 6539 TTTTCATTGACGATGCCGTCACTGGCTGCAAAGAATGCCAAGACGTGTGAGATGAAGTGC 6598 Query 4998 TGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCA 5057 | || | | | || ||| ||| || || ||| || | | || || ||||| Sbjct 6599 TTCTCATTCTTCGTCAGCTTTGCCCAATGTTCCAGATCCTTGGAGAGGTCGACCTCTTCC 6658 Query 5058 ACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCAGGATACTGAATC 5117 | ||||| |||||||| || ||||| |||||||| ||| || || ||||||| || Sbjct 6659 GCCGTCCAGAACGACGCCTCGGCTTTCTTGTACATGTGCCAGATGTCGTGATACTGGATG 6718 Query 5118 GGAAGTATGACAAATCT 5134 || | |||||||| || Sbjct 6719 GGGAAGATGACAAACCT 6735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423733857589643