Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq250674 300 2e-76 seq620319 104 3e-17 seq407716 98.7 1e-15 >seq250674 Length=71378 Score = 300 bits (332), Expect = 2e-76 Identities = 609/897 (68%), Gaps = 23/897 (3%) Strand=Plus/Minus Query 47841 ACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAAT 47900 || ||||||||||||||||| || || ||| | || ||||||||||| ||||||||||| Sbjct 3687 ACACCCATTTTTTGATATTCCCCAACTCGTCTTTCAAAAAAATTAGTCTTGCCTTCCAAC 3628 Query 47901 GATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAAT 47960 || || ||||||||||| ||||||||||| | ||||||| | || | |||| | Sbjct 3627 GAAATGTTTTCCATAAAGTCAAATGGATTGTCAACATTATACACCTTATCGTATCCGAGC 3568 Query 47961 TCTGAAATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCA---TTTCACAATTC 48017 || | |||||||| ||||| ||||||||||| | ||||| || | || Sbjct 3567 TCAAGTAGTAGTCTATCGGCAACAAATTCTATATACTGTCCCATCAGAGTTGCG---TTG 3511 Query 48018 ATTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCA 48077 || || || || | | | || ||||| | || || | ||| || ||||| Sbjct 3510 ATCCCGATTAGAGCGCATTGAAAGGCATCCGTTAAGAATTCCTTTTCAATCTCAACAGCT 3451 Query 48078 TCCACTATTATCGATGTTACCGTTTCCTCACTT----GGTGGATACAACAAATGTTTAAA 48133 || |||| | |||| | | || | ||| || | || || | Sbjct 3450 TC----ATTAACCATGTGATAAATATGAGACGTATCTGGTTTATTTTTTACATACTTGTA 3395 Query 48134 CATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAA 48193 | | ||| |||||||||||||| | || ||||| | ||| || | |||||| | ||| Sbjct 3394 TAGGAGACACGCAAAATCACAATGCAATCCCTCATCGCGACTTATCAGTTCGTTGGCAAA 3335 Query 48194 TGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGA 48253 || | |||||||| | || | ||||| ||||||||||| || || || | || || Sbjct 3334 CGTTAAACCGGGCAATTTACCTCTCTTTTTTAGCCAAAATATGGCAGCAAACGCACCCGA 3275 Query 48254 AAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCT---TC 48310 ||| || |||||||| || | |||||||| ||| | || |||| ||| | Sbjct 3274 AAAAAAAATGCCTTCCACCACGGCAAATGCAACAAGGCGGGTACCAAAACTTGCTGTATT 3215 Query 48311 GTTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTAT 48370 ||||| |||||| | |||||| | || || || | | ||| || ||| || || Sbjct 3214 GTTGTCTATCCAGTCTAATGCCCATTTTGCTTTTTTTTGAATACACGGAATTTCCTCGAT 3155 Query 48371 AGCATTAAAGAGAAAGtt-tttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGAC 48429 ||||| | | || ||| ||||| ||| |||||| ||||| || || || | || Sbjct 3154 TGCATTTATCA-AATGTTGTTTTTGTTTGGAATCTTTTACGTACGTTTCGATCAGCAGCG 3096 Query 48430 TATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTT 48489 |||||||||||| || |||||||| || || ||||||||||| || || ||| ||| Sbjct 3095 AATACATTTCGGAATGGATATTTTCCATGGCAATCTGAAATCCATAGAAGTATCGGACTT 3036 Query 48490 CTGTGATCTGTACCTCCGTACAAAATCGTTCAGCC--AAATTCTCATTTACTATTCCATC 48547 ||| || || || || || ||| ||| ||| ||||| || ||||| || ||||| Sbjct 3035 CTGGAATTTGAACTTCACGACTAAAGCGT--AGCATTAAATTTTCGTTTACAATACCATC 2978 Query 48548 ACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTT 48607 ||| ||||||||||| ||||| || | |||||||| | |||| | || || Sbjct 2977 ACTGGCAGCAAAAAAGGCTAACACGTACAAAATAAAATGTCTTTCATCATCCGTGAGACC 2918 Query 48608 ATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTC 48667 | ||| || || | ||||| || | ||| |||||||| | ||||||||| ||| | Sbjct 2917 AAGCCAATCGTTTACGTCTTTAGACAAATCCACTTCTTCGGTAACCCAAAATGAGGCCAC 2858 Query 48668 TGCTTTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCT 48724 |||||| |||||||| | ||||| ||| |||| ||||| ||| |||||| || Sbjct 2857 TGCTTTCTTATACATTTCCCATACATCGTGATATTTAATTGGATAAAGAACAAACCT 2801 >seq620319 Length=78974 Score = 104 bits (114), Expect = 3e-17 Identities = 160/226 (71%), Gaps = 7/226 (3%) Strand=Plus/Minus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 || ||||| || || | |||||| || || ||||| |||||||||||||| | ||| || Sbjct 15678 TCGTCTCTGCTGATAAGTTCGTTGGAGAAGGTGAGTCCGGGCATTAGTCCCCTTTTCTTC 15619 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCG 48284 | ||| || || || || || || ||||| ||||| || || |||||||| |||||||| Sbjct 15618 AACCAGAAGATGGCAGCAAAGGAGCCAGAGAAGAAGATTCCCTCTACGGCGGCAAATGCA 15559 Query 48285 GTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT---ATCCACCGTT--GTGCCCAATCAG 48339 | || ||| || || | || |||| ||||| ||| | ||||| | | Sbjct 15558 ACTACCCTTGTACCGAAATCAGCCTTGTCGTGTGCGATCCA--GTTGAGCGCCCACTGTG 15501 Query 48340 CCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAA 48385 ||||||| ||||||| || | || || ||||| || || || || Sbjct 15500 CCTTCTTGGTTACACACGGAAGAGTCTCGATAGCGTTGAACAGGAA 15455 >seq407716 Length=13296 Score = 98.7 bits (108), Expect = 1e-15 Identities = 159/226 (70%), Gaps = 7/226 (3%) Strand=Plus/Plus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 || ||||| || || | |||||| || || ||||| || ||||||||||| | || || Sbjct 4586 TCGTCTCTGCTGATAAGTTCGTTGGAGAAGGTGAGTCCAGGCATTAGTCCCCTCTTCTTC 4645 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCG 48284 | ||| || || || || || || || || ||||| || || ||||| || ||||||||| Sbjct 4646 AACCAGAAGATGGCAGCAAAGGAGCCTGAGAAGAAGATTCCCTCTACAGCAGCAAATGCG 4705 Query 48285 GTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT---ATCCACCGTT--GTGCCCAATCAG 48339 | ||| ||| || || |||| |||| ||||| ||| | ||||| | | Sbjct 4706 ACTACCCTCGTCCCGAAATCAGCCTCGTCGTGTGCGATCCA--GTTGAGCGCCCACTGTG 4763 Query 48340 CCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAA 48385 ||||||| ||||||| || | || || ||||| || || || || Sbjct 4764 CCTTCTTGGTTACACACGGAAGAGTCTCGATAGCGTTGAACAGGAA 4809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 689136883161440