Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq250674 282 6e-71 seq620319 107 3e-18 seq407716 100 4e-16 >seq250674 Length=71378 Score = 282 bits (312), Expect = 6e-71 Identities = 604/896 (67%), Gaps = 21/896 (2%) Strand=Plus/Minus Query 46330 ACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAAT 46389 || ||||||||||| ||||| || || ||| | || ||||||||||| ||||||||||| Sbjct 3687 ACACCCATTTTTTGATATTCCCCAACTCGTCTTTCAAAAAAATTAGTCTTGCCTTCCAAC 3628 Query 46390 GATATATTTTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAAT 46449 || || ||||||||||| ||||| ||||| ||||||||| | || | |||| | Sbjct 3627 GAAATGTTTTCCATAAAGTCAAATGGATTGTCAACATTATACACCTTATCGTATCCGAGC 3568 Query 46450 TCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCA---TTTCACAATTC 46506 || | |||||||| ||||| |||||||||||| | ||||| || | || Sbjct 3567 TCAAGTAGTAGTCTATCGGCAACAAATTCTATATACTGTCCCATCAGAGTTGCG---TTG 3511 Query 46507 ATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCA 46566 || || || || | | | || ||||| | || || | |||||| ||||| Sbjct 3510 ATCCCGATTAGAGCGCATTGAAAGGCATCCGTTAAGAATTCCTTTTCAATCTCAACAGCT 3451 Query 46567 TCCGATATTATCGATGTTAC-----TGTTTCCTCACTTGGTGGATGCATCAAATGTTTAA 46621 || |||| | |||| | || | | || ||| || | | || || Sbjct 3450 TC----ATTAACCATGTGATAAATATGAGACGTATCT-GGTTTATTTTTTACATACTTGT 3396 Query 46622 ACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAA 46681 | | | ||| |||||||||||||| | || ||||| | ||| || | |||||| | || Sbjct 3395 ATAGGAGACACGCAAAATCACAATGCAATCCCTCATCGCGACTTATCAGTTCGTTGGCAA 3336 Query 46682 ATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAG 46741 | || | || |||| | || | |||||| ||||||||||| || || || | || | Sbjct 3335 ACGTTAAACCGGGCAATTTACCTCTCTTTTTTAGCCAAAATATGGCAGCAAACGCACCCG 3276 Query 46742 AAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGC---AT 46798 |||| || |||||||| || | || ||||| ||||| | || |||| || || Sbjct 3275 AAAAAAAAATGCCTTCCACCACGGCAAATGCAACAAGGCGGGTACCAAAACTTGCTGTAT 3216 Query 46799 CATTATGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTA 46858 || | ||||| | ||||| | || ||||| | | ||| || ||| || | Sbjct 3215 TGTTGTCTATCCAGTCTAATGCCCATTTTGCTTTTTTTTGAATACACGGAATTTCCTCGA 3156 Query 46859 TAGCATTAAAGAGAAAGtt-tttttCATCACTATCTTTAACATATGTATCTATTAAAAGA 46917 | ||||| | | || ||| ||||| | |||||| || || || || || | || Sbjct 3155 TTGCATTTATCA-AATGTTGTTTTTGTTTGGAATCTTTTACGTACGTTTCGATCAGCAGC 3097 Query 46918 CTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCT 46977 ||||||||| ||||| || ||||| || || ||||||||||| || || ||| || Sbjct 3096 GAATACATTTCGGAATGGATATTTTCCATGGCAATCTGAAATCCATAGAAGTATCGGACT 3037 Query 46978 TCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCA 47037 || | ||| || || || || ||| ||| ||||| || || || || |||||| Sbjct 3036 TCTGGAATTTGAACTTCACGACTAAAGCGTAGCATTAAATTTTCGTTTACAATACCATCA 2977 Query 47038 CTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTA 47097 || ||||||||||| || || || | |||||||| | ||||||| || || | Sbjct 2976 CTGGCAGCAAAAAAGGCTAACACGTACAAAATAAAATGTCTTTCATCATCCGTGAGACCA 2917 Query 47098 TTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCT 47157 ||| || || | ||||| || | ||| |||||||| | ||| ||||| ||| || Sbjct 2916 AGCCAATCGTTTACGTCTTTAGACAAATCCACTTCTTCGGTAACCCAAAATGAGGCCACT 2857 Query 47158 GCTTTTTTATACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAATCT 47213 ||||| |||||||| | ||||| ||| |||||| || ||| ||| |||||| || Sbjct 2856 GCTTTCTTATACATTTCCCATACATCGTGATATTTAATTGGATAAAGAACAAACCT 2801 >seq620319 Length=78974 Score = 107 bits (118), Expect = 3e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 47013 CAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAA 47072 || ||| ||||| || || || ||||| || || || |||||||| |||||| || || Sbjct 13699 CAGATTTTCATTGACGATGCCGTCACTTGCTGCGAAGAATGCCAAGACATGTGAGATGAA 13640 Query 47073 ATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTC 47132 | || |||| | ||||| || ||| | | | ||| || || | || || || Sbjct 13639 GTGCTTCTCATTCTTCGTCAGCTTTGCCCAATGTTCCAGATCCTTGGAGAGGTCGACCTC 13580 Query 47133 TTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACGATATTG 47192 ||| ||||||||||| || ||||| ||||| || ||||| | ||| || || |||| || Sbjct 13579 TTCCGCTGTCCAGAACGATGCCTCGGCTTTCTTGTACATGTGCCAGATGTCGTGATACTG 13520 Query 47193 GATCGGAAAAATAACAAATCTATTTGGATTTTTTGCAAGTATAGGTTCC 47241 ||| || || || || || || |||| || | | |||| ||||||| Sbjct 13519 GATGGGGAAGATGACGAACCTCCTTGGGTTCTCTCGTAGTAAAGGTTCC 13471 >seq407716 Length=13296 Score = 100 bits (110), Expect = 4e-16 Identities = 157/224 (70%), Gaps = 3/224 (1%) Strand=Plus/Plus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 || ||||| || || | |||||| || || ||||| |||||||||||||| | ||| || Sbjct 4586 TCGTCTCTGCTGATAAGTTCGTTGGAGAAGGTGAGTCCAGGCATTAGTCCCCTCTTCTTC 4645 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 | ||| || || || || || || || || ||||| || || |||||||| || |||||| Sbjct 4646 AACCAGAAGATGGCAGCAAAGGAGCCTGAGAAGAAGATTCCCTCTACAGCAGCAAATGCG 4705 Query 46774 ACAAGTCTCTCTCCGTAACTGGCATCATTATG---AATCCACCTTTGAGCCCAATCAGCC 46830 || | ||| ||| || || || | || ||||| | | ||||| | ||| Sbjct 4706 ACTACCCTCGTCCCGAAATCAGCCTCGTCGTGTGCGATCCAGTTGAGCGCCCACTGTGCC 4765 Query 46831 TTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAA 46874 || || ||||||| || | || || ||||| || || || || Sbjct 4766 TTCTTGGTTACACACGGAAGAGTCTCGATAGCGTTGAACAGGAA 4809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 707257027110720