Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq34585 122 2e-22 >seq34585 Length=75490 Score = 122 bits (134), Expect = 2e-22 Identities = 159/217 (73%), Gaps = 10/217 (5%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||||||||||||||||||||| ||||||||||| || | | || | || || Sbjct 7479 AGCACAAGATGAAGAGTAGACTCTTTCTGGATGTTGTAGTCTGACAGGGTACGGCCGTCC 7420 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| || |||||||| || | |||||| || | | ||| || ||||| | Sbjct 7419 TCGAGCTGCTTT--CCAGCGAAGATGAGACGCTGCTGATCTGGTGGGATACCCTCCTTGT 7362 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAA 152067 | || || ||| || ||| | || | |||| ||| ||| || || ||||| | Sbjct 7361 CCTGGATCTTTGCCTTTACATTTTCAATAGTGTC---ACTTGGCTCCACCTCCAGAGTGA 7305 Query 152068 TAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | |||||||| || || ||||||||||||| |||||| Sbjct 7304 TGGTTTTGCCAGTTAGCGTCTTCACGAAGATCTGCAT 7268 Score = 113 bits (124), Expect = 1e-19 Identities = 157/217 (72%), Gaps = 10/217 (5%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || |||||||||||||| ||||| || ||||| ||||| || | | || | || || Sbjct 7251 AGCACAAGATGAAGAGTTGACTCCTTCTGGATATTGTAGTCTGACAGGGTACGGCCGTCC 7192 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| || |||||||| || | |||||| || | | ||| || || || | Sbjct 7191 TCGAGCTGCTTT--CCAGCGAAGATGAGACGCTGCTGATCTGGTGGGATACCCTCTTTGT 7134 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAA 152067 |||| || ||| || ||| | || | |||| ||| ||| || |||||||| | Sbjct 7133 CTTGGATCTTTGCCTTTACATTTTCAATAGTGTC---ACTTGGCTCCACCTCAAGAGTGA 7077 Query 152068 TAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | |||||||| ||||| ||||| ||||||| |||||| Sbjct 7076 TGGTTTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 7040 Score = 102 bits (112), Expect = 2e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 ||||||||||| || ||||| || ||||| ||||| || | | ||| | ||||| || Sbjct 6792 ACAAGATGAAGTGTTGACTCCTTCTGGATATTGTAGTCAGACAGAGTGCGGCCATCCTCA 6733 Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015 || || || |||||||| || | |||||| || | | ||| |||||||| || || Sbjct 6732 AGCTGCTTGCCAGCGAAGATGAGTCGCTGCTGATCAGGTGGGATACCTTCCTTGTCCTGG 6673 Query 152016 ATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTG 152075 || || || ||| | || | | | || | || || ||||| || || || ||| Sbjct 6672 ATCTTGGCCTTCACATTTTCAATGGTATCACTAGGTTCGACCTCAAGTGTGATGGTCTTG 6613 Query 152076 CCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || |||||||| ||||| |||| |||||| Sbjct 6612 CCAGTGAGAGTTTTCACAAAGATCTGCAT 6584 Score = 102 bits (112), Expect = 2e-16 Identities = 153/214 (71%), Gaps = 10/214 (5%) Strand=Plus/Minus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 || ||||||||||| ||||| || ||||| ||||| || | | || | || || || Sbjct 7704 ACGAGATGAAGAGTCGACTCCTTCTGGATATTGTAGTCTGACAGGGTACGGCCGTCCTCG 7645 Query 151956 AG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTT 152013 || ||||| || || ||||| || | |||||| || | || ||| |||||||| || | Sbjct 7644 AGCTGCTTT--CCTGCAAAGATGAGACGCTGCTGATCTGGCGGGATACCTTCCTTGTCCT 7587 Query 152014 GAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAG 152070 | || ||| ||| ||| | || | | | || ||| |||||| || | || || | Sbjct 7586 GGATCTTTGCTTTCACATTTTCGATGGTATC---ACTGGGCTCTACCTCTAATGTGATGG 7530 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | ||||| ||||| |||||||| |||| |||||| Sbjct 7529 TCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 7496 Score = 100 bits (110), Expect = 7e-16 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 |||||||||||||| || || || ||||| ||||| || | | || | || || || Sbjct 7020 ACAAGATGAAGAGTTGATTCCTTCTGGATATTGTAGTCTGACAGGGTACGGCCGTCCTCG 6961 Query 151956 AG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTT 152013 || ||||| || || ||||| || | |||||| || | | ||| |||||||| || | Sbjct 6960 AGCTGCTTT--CCAGCAAAGATGAGACGCTGCTGATCTGGTGGGATACCTTCCTTGTCCT 6903 Query 152014 GAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTT 152073 | || ||| ||| || | || | | | || |||||| || || || || || | Sbjct 6902 GGATCTTTGCTTTCACGTTTTCGATGGTATCGCTGGGCTCTACCTCTAGTGTGATGGTCT 6843 Query 152074 TGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||| ||||| ||||||||||||| |||||| Sbjct 6842 TGCCAGTGAGCGTCTTCACGAAGATCTGCAT 6812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1144402769810641