Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq250674 354 8e-93 >seq250674 Length=71378 Score = 354 bits (392), Expect = 8e-93 Identities = 616/886 (70%), Gaps = 26/886 (3%) Strand=Plus/Minus Query 23209 ACACCCATTTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTCTAAT 23268 |||||||||||||||||||||||||| |||||||| |||||||| ||||| || || || Sbjct 3687 ACACCCATTTTTTGATATTCCCCAACTCGTCTTTCAAAAAAATTAGTCTTGCCTTCCAAC 3628 Query 23269 GATATATTTTCCATAAAATCAAATGGATTAGAAGTATTATATACAGCTTTAC--ATGATA 23326 || || ||||||||||| ||||||||||| | |||||| || ||| | || | Sbjct 3627 GAAATGTTTTCCATAAAGTCAAATGGATTGTCAACATTATACAC--CTTATCGTATCCGA 3570 Query 23327 ATTCCTTTAAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCATAGTTTA 23386 || || || ||||| || |||||||| ||||| || | ||||| | ||| | Sbjct 3569 GCTCAAGTAGTAGTCTATCGGCAACAAATTCTATATACTGTCCCATCAGAGTTGCGTTGA 3510 Query 23387 TACCTATTAGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACAGCAT 23446 | || ||||| | ||| ||||| ||||||| |||||||| |||||| | Sbjct 3509 TCCCGATTAGAGCGCATTGAAAGGCATCCGTTAAGAATTCCTTTTCAATCTCAACAGCTT 3450 Query 23447 CTTTAATTATTTGAACAATA----ACTTCTTCACTAGGTGGATATTTTAAATACTTAAAC 23502 | |||| || ||| |||| || | | || ||| || ||||| |||||| | Sbjct 3449 CATTAACCATGTGATAAATATGAGACGTAT---CT-GGTTTATTTTTTACATACTTGTAT 3394 Query 23503 AATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAAT 23562 | | ||| |||||||||||||| | || ||||| | ||| |||| ||| || | ||| Sbjct 3393 AGGAGACACGCAAAATCACAATGCAATCCCTCATCGCGACTTATCAGTTCGTTGGCAAAC 3334 Query 23563 GTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAA 23622 ||||| || |||| | |||| ||||| | ||||||||| |||||||| | || ||| Sbjct 3333 GTTAAACCGGGCAATTTACCTCTCTTTTTTAGCCAAAATATGGCAGCAAACGCACCCGAA 3274 Query 23623 AAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAA 23682 || ||||| || || || | ||||| || ||||| || |||||||| |||| ||| Sbjct 3273 AAAAAAATGCCTTCCACCACGGCAAATGCAACAAGGCGGGTACCAAAACTTGCTGTATTG 3214 Query 23683 TCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATT 23742 | ||||| | | || ||| || || || || | |||| |||| || ||| Sbjct 3213 TTGTCTATCCAGTCTAATGCCCATTTTGCTTTTTTTTGAATACACGGAATTTCCTCGATT 3154 Query 23743 GCTTTTAAGAGAAAAGT--TTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAAC 23800 || |||| ||| || ||||| || |||| ||| || || || || || | Sbjct 3153 GCATTTA--TCAAATGTTGTTTTTGTTTGGAATCTTTTACGTACGTTTCGATCAGCAGCG 3096 Query 23801 TATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTT 23860 ||||||||| ||||| |||||||| || ||||||||||| ||||| || ||| ||| Sbjct 3095 AATACATTTCGGAATGGATATTTTCCATGGCAATCTGAAATCCATAGAAGTATCGGACTT 3036 Query 23861 CAGACAATTGAACATCATTAAAAAATCTTTTAGC--TAAATTTTCGTTAACAATACCATC 23918 | | | |||||| ||| | ||| | |||| |||||||||||| ||||||||||| Sbjct 3035 CTGGAATTTGAACTTCACGACTAAAGC--GTAGCATTAAATTTTCGTTTACAATACCATC 2978 Query 23919 ACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAATTT 23978 ||| |||||||| || || | || || |||||||||||||||||| | | Sbjct 2977 ACTGGCAGCAAAAAAGGCTAACACGTACAAAATAAAATGTCTTTCATCATCCGTGAGACC 2918 Query 23979 TTTCCAATCATTAATATCTTTTGATAAATCAACTTCATC---AACTGTCCAAAAACTTGC 24035 |||||| || | ||||| || ||||| ||||| || ||| |||||| || Sbjct 2917 AAGCCAATCGTTTACGTCTTTAGACAAATCCACTTCTTCGGTAAC---CCAAAATGAGGC 2861 Query 24036 CAAGGCACGCTTATACATTAGCCAAATATCATTATGTTGTATTGGA 24081 || || |||||||||| ||| | ||| | || || |||||| Sbjct 2860 CACTGCTTTCTTATACATTTCCCATACATCGTGATATTTAATTGGA 2815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517335188979400