Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq34585 132 3e-26 seq133437 93.3 3e-14 >seq34585 Length=75490 Score = 132 bits (146), Expect = 3e-26 Identities = 170/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | || | |||||| || ||||| || ||||| ||||| ||||| || Sbjct 7042 CATACCACCACGGAGACGCAACACAAGATGAAGAGTTGATTCCTTCTGGATATTGTAGTC 6983 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || || |||| || |||||||| || |||||||| | |||||||||||||| Sbjct 6982 TGACAGGGTACGGCCGTCCTCGAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGATCTGG 6923 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | ||||||||| ||| ||||| ||||| | ||| | ||||| ||| || | Sbjct 6922 TGGGATACCTTCCTTGTCCTGGATCTT-TGCTTTCACGTTTTCGATGGTATCGCTGGGCT 6864 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||||| | || || ||||| || ||||| |||||||||||||| ||||| Sbjct 6863 CTACCTCTAGTGTGATGGTCTTGCCAGTGAGCGTCTTCACGAAGATCTGCAT 6812 Score = 132 bits (146), Expect = 3e-26 Identities = 170/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | || | |||||| || ||||| || |||||| ||||| ||||| || Sbjct 7726 CATACCACCACGGAGACGCAACACGAGATGAAGAGTCGACTCCTTCTGGATATTGTAGTC 7667 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || || |||| || |||||||| || |||||||| | |||||||||||||| Sbjct 7666 TGACAGGGTACGGCCGTCCTCGAGCTGCTTTCCTGCAAAGATGAGACGCTGCTGATCTGG 7607 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTT-CAATGTTCCTATGGTGTCGGCGGATT 44285 || | ||||||||| ||| ||||| ||||| || || | ||||| || || | Sbjct 7606 CGGGATACCTTCCTTGTCCTGGATCTT-TGCTTTCACATTTTCGATGGTATCACTGGGCT 7548 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||||| | || || ||||| || |||||||||||||| ||||| ||||| Sbjct 7547 CTACCTCTAATGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 7496 Score = 118 bits (130), Expect = 8e-22 Identities = 167/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | || | |||||| || ||||| || |||||| ||||| ||||| || Sbjct 6814 CATACCACCACGGAGACGCAACACAAGATGAAGTGTTGACTCCTTCTGGATATTGTAGTC 6755 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| | || || |||||||| || || ||||| | ||||||||||| | Sbjct 6754 AGACAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGTCGCTGCTGATCAGG 6695 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | ||||||||| ||| ||||| ||||| || | ||||| || | ||| Sbjct 6694 TGGGATACCTTCCTTGTCCTGGATCTTGGCCTTCACATTTTCAATGGTATCACTAGGTTC 6635 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 ||||| | || || ||||| || ||||| || ||||| ||||| ||||||||| Sbjct 6634 GACCTCAAGTGTGATGGTCTTGCCAGTGAGAGTTTTCACAAAGATCTGCATGATG 6580 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||| || ||||| || ||| || ||||||||||| || | || || |||| || Sbjct 7477 CACAAGATGAAGAGTAGACTCTTTCTGGATGTTGTAGTCTGACAGGGTACGGCCGTCCTC 7418 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| || || ||||| | |||||||||||||| || | ||| ||||| ||| Sbjct 7417 GAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCTGGTGGGATACCCTCCTTGTCCTG 7358 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||| | || | || ||||| | |||||||||| || || || || Sbjct 7357 GATCTTTGCCTTTACATTTTCAATAGTGTCACTTGGCTCCACCTCCAGAGTGATGGTTTT 7298 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || |||||||||||||| ||||| Sbjct 7297 GCCAGTTAGCGTCTTCACGAAGATCTGCAT 7268 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||| || ||||| || |||||| ||||| ||||| || | || || |||| || Sbjct 7249 CACAAGATGAAGAGTTGACTCCTTCTGGATATTGTAGTCTGACAGGGTACGGCCGTCCTC 7190 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| || || ||||| | |||||||||||||| || | ||| || || || Sbjct 7189 GAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCTGGTGGGATACCCTCTTTGTCTTG 7130 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||| | || | || ||||| | |||||||| | || || || || Sbjct 7129 GATCTTTGCCTTTACATTTTCAATAGTGTCACTTGGCTCCACCTCAAGAGTGATGGTTTT 7070 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||||||||| |||||||| ||||| Sbjct 7069 GCCAGTGAGGGTCTTGACGAAGATCTGCAT 7040 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCT--CGTCGT 44186 || || || || ||| ||| || || |||||||| || | || || || | || | Sbjct 7932 ACAAGATGGAGAGTGGACTCTTTCTGAATGTTGTAGTCAGATAG--GGTTCTGCCATCCT 7875 Query 44187 CCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCG 44246 | |||||||| || || ||||| | |||||||||||||| || | ||| || || || Sbjct 7874 CGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCTGGTGGGATACCCTCTTTGTCTT 7815 Query 44247 TTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||| | || | || ||||| | |||||||||| || || || | Sbjct 7814 GGATCTTTGCCTTTACATTTTCAATAGTGTCACTCGGCTCCACCTCCAATGTGATGGTTT 7755 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || ||||||||||| |||||||| ||||| Sbjct 7754 TACCGGTGAGGGTCTTGACGAAGATCTGCAT 7724 >seq133437 Length=111544 Score = 93.3 bits (102), Expect = 3e-14 Identities = 149/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCT--CGTCG 44185 ||| || || || ||| |||| || || |||||||| || | || || || | || Sbjct 106775 CACAAGATGGAGAGTGGTCTCTTTCTGAATGTTGTAGTCAGACAG--GGTTCTGCCATCC 106718 Query 44186 TCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCC 44245 ||||||||||| || || ||||| | ||||||||||| || | | ||| || | || Sbjct 106717 TCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATGTGGTTGGATACCCTCTTCGTCT 106658 Query 44246 GTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305 |||||| ||| | || | || |||| | |||||||||| || || || Sbjct 106657 TGGATCTTCGCCTTTACATTTTCAATAATGTCACTTGGCTCCACCTCCAGTGTGATGGTT 106598 Query 44306 TTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || ||||||||||| |||||||||||||| Sbjct 106597 TTACCGGTGAGGGTCTTGACGAAGATTTGCAT 106566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357195325524807