Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq34585 141 2e-28 seq133437 86.0 1e-11 >seq34585 Length=75490 Score = 141 bits (156), Expect = 2e-28 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || |||||||||||||| || || || ||||| || ||||| ||| || Sbjct 6587 CAGATCTTTGTGAAAACTCTCACTGGCAAGACCATCACACTTGAGGTCGAACCTAGTGAT 6646 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || || ||||| |||||||| ||||| ||||| || || ||||| Sbjct 6647 ACCATTGAAAATGTGAAGGCCAAGATCCAGGACAAGGAAGGTATCCCACCTGATCAGCAG 6706 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||| |||||||| || || ||||| || ||||| | ||||| | || || || || Sbjct 6707 CGACTCATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACTCTGTCTGACTACAATATC 6766 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 || || || |||||||| |||||||| ||| | ||| Sbjct 6767 CAGAAGGAGTCAACACTTCATCTTGTGTTGCGTCTC 6802 >seq133437 Length=111544 Score = 86.0 bits (94), Expect = 1e-11 Identities = 111/152 (73%), Gaps = 1/152 (1%) Strand=Plus/Plus Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 || |||||||||||||| ||| |||||| |||||||| || || ||||| || || ||| Sbjct 106399 GATACCATCGAGAACGTGGAAC-AAAGATCCAGGACAAGGAGGGTATCCCACCAGATCAG 106457 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 | || ||||||| || || || |||||||| || || | | || | | || || Sbjct 106458 TAGCGTGTTATCTTTGCTGGCAAGCAGCTCGAGGACGGCCGTAACCTGTCAAACTACAAT 106517 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGTTTT 178132 |||| || | ||||| || |||||||| || Sbjct 106518 ATCCAGAAGAAGTCAACTCTTCATCTTGTGTT 106549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1193905777558774