Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq34585 134 1e-26 seq133437 100 3e-16 seq156656 93.3 4e-14 >seq34585 Length=75490 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||| ||||| || || ||| ||||| ||||| ||||| || Sbjct 7494 CCACCACGGAGACGAAGCACAAGATGAAGAGTAGACTCTTTCTGGATGTTGTAGTCTGAC 7435 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || |||| ||||||||||| || ||||| || || ||||| || || | || Sbjct 7434 AGGGTACGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCTGGTGGG 7375 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | | |||||||||| ||| ||| ||| | | |||||| || | ||||||| Sbjct 7374 ATACCCTCCTTGTCCTGGATCTTTGCCTTTACATTTTCAATAGTGTCACTTGGCTCCACC 7315 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || ||||| || || |||||||| ||||| |||||||| Sbjct 7314 TCCAGAGTGATGGTTTTGCCAGTTAGCGTCTTCACGAAGATCTGCAT 7268 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | || ||||| || ||| ||| ||||||||||| ||||| || Sbjct 7951 GCCACCACGGAGACGGAGAACAAGATGGAGAGTGGACTCTTTCTGAATGTTGTAGTCAGA 7892 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||| | | || |||||||||||||| ||||| || || ||||| || || | || Sbjct 7891 TAGGGTTCTGCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCTGGTGG 7832 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | | ||| ||||| ||| ||| ||| | | |||||| |||| |||||| Sbjct 7831 GATACCCTCTTTGTCTTGGATCTTTGCCTTTACATTTTCAATAGTGTCACTCGGCTCCAC 7772 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || || |||||||| || || ||||| ||||| |||||||| Sbjct 7771 CTCCAATGTGATGGTTTTACCGGTGAGGGTCTTGACGAAGATCTGCAT 7724 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| ||||| ||||| || || |||||||| || || ||||| || Sbjct 7038 CCACCACGGAGACGCAACACAAGATGAAGAGTTGATTCCTTCTGGATATTGTAGTCTGAC 6979 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || |||| ||||||||||| || || || || || ||||| || || | || Sbjct 6978 AGGGTACGGCCGTCCTCGAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGATCTGGTGGG 6919 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||||||||| || | ||||||| ||| | | || ||||| | ||| || Sbjct 6918 ATACCTTCCTTGTCC-TGGATCTTTGCTTTCACGTTTTCGATGGTATCGCTGGGCTCTAC 6860 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || || || || || |||||||| ||||| |||||||| Sbjct 6859 CTCTAGTGTGATGGTCTTGCCAGTGAGCGTCTTCACGAAGATCTGCAT 6812 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||| ||||| || || ||||||||| || || ||||| || Sbjct 7266 CCACCACGGAGACGAAGCACAAGATGAAGAGTTGACTCCTTCTGGATATTGTAGTCTGAC 7207 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || |||| ||||||||||| || ||||| || || ||||| || || | || Sbjct 7206 AGGGTACGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCTGGTGGG 7147 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | | ||| ||||| ||| ||| ||| | | |||||| || | ||||||| Sbjct 7146 ATACCCTCTTTGTCTTGGATCTTTGCCTTTACATTTTCAATAGTGTCACTTGGCTCCACC 7087 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | || || ||||| || || || ||||| ||||| |||||||| Sbjct 7086 TCAAGAGTGATGGTTTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 7040 Score = 105 bits (116), Expect = 6e-18 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| ||||| ||||| || || ||||||||| || || ||||| || Sbjct 7722 CCACCACGGAGACGCAACACGAGATGAAGAGTCGACTCCTTCTGGATATTGTAGTCTGAC 7663 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGGG 41754 ||||| || |||| ||||||||||| || || || || || ||||| || || ||||| Sbjct 7662 AGGGTACGGCCGTCCTCGAGCTGCTTTCCTGCAAAGATGAGACGCTGCTGATCTGGCGGG 7603 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || ||||||||| || | ||||||| || | | || || || | ||| | Sbjct 7602 ATACCT-TCCTTGTCC-TGGATCTTTGCTTTCACATTTTCGATGGTATCACTGGGCTCTA 7545 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| | || || || || || || || ||||| || || |||||||| Sbjct 7544 CCTCTAATGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 7496 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| ||||| ||||| || || ||||||||| || || ||||| || Sbjct 6810 CCACCACGGAGACGCAACACAAGATGAAGTGTTGACTCCTTCTGGATATTGTAGTCAGAC 6751 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || || ||||||||||| ||||| || || ||||| || || | || Sbjct 6750 AGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGTCGCTGCTGATCAGGTGGG 6691 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | | ||||||||| ||| || ||||| | || || || | || ||| Sbjct 6690 ATACCTTCCTTGTCCTGGATCTTGGCCTTCACATTTTCAATGGTATCACTAGGTTCGACC 6631 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || | || || || || || || || || || || || ||||||||| Sbjct 6630 TCAAGTGTGATGGTCTTGCCAGTGAGAGTTTTCACAAAGATCTGCATG 6583 >seq133437 Length=111544 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||| | | ||| ||||| || ||| |||| ||||||||||| ||||| || Sbjct 106793 GCCACCACGAAGATGGAGCACAAGATGGAGAGTGGTCTCTTTCTGAATGTTGTAGTCAGA 106734 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||| | | || || ||||||||||| ||||| || || ||||| || | | | Sbjct 106733 CAGGGTTCTGCCATCCTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATGTGGTTG 106674 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | | ||| | ||| ||| || ||| | | | |||| || | |||||| Sbjct 106673 GATACCCTCTTCGTCTTGGATCTTCGCCTTTACATTTTCAATAATGTCACTTGGCTCCAC 106614 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || || |||||||| || || ||||| ||||| || ||||| Sbjct 106613 CTCCAGTGTGATGGTTTTACCGGTGAGGGTCTTGACGAAGATTTGCAT 106566 >seq156656 Length=67780 Score = 93.3 bits (102), Expect = 4e-14 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 || ||||| || ||| ||||||||||||||| ||||| || |||||||| | || || Sbjct 29872 ACAAGATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCTGACAGGGTGCGGCCATCTTCC 29813 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGC 41759 ||||||||||| || || ||||| ||||| ||||| | |||| || Sbjct 29812 AGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGAATGC 29767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 458622494105200