Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Exaiptasia_20pallida_20[refseq_20GCF_5F001417965.1_202015-10-28] 4,312 sequences; 256,132,296 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq1713 181 1e-40 seq3597 179 4e-40 seq3797 84.2 2e-11 >seq1713 Length=288524 Score = 181 bits (200), Expect = 1e-40 Identities = 551/828 (67%), Gaps = 43/828 (5%) Strand=Plus/Minus Query 16793 AATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGA 16852 ||||| || | |||||||| || ||||| | ||| | | | ||||||||| | ||| Sbjct 285798 AATCTGTCAGACACAAATTCAATGTATTGACCCATAAGGTTACTGTTCATTCCAAGGAGA 285739 Query 16853 CGTACCGGAAGAGCTTCCGTCAAAAA-TCGTTGCTCTATAACAACCGCTTCCTTAATAAT 16911 | ||||| || || ||| | || || || || || ||| ||||| |||||| Sbjct 285738 TGACATGGAAGGGCATCAGTCCAGAACTCCTTT-TCAATGTTAACAGCTTCACAAATAAT 285680 Query 16912 ACTAGC-AACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTA---AACATCAGACATG 16967 || | ||| ||| | || | ||| | | |||| |||| ||||||| |||| Sbjct 285679 -CTCCCTAACCCGTGCTTCAGTKGGTTTRTTGATAAG---TTTAGAGAACATCAAGCATG 285624 Query 16968 CGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGG 17027 | ||||| || || | || || ||||||||||| ||||| ||||| ||| || || | Sbjct 285623 CAAAATCACAGTGAAGACCTTCRTCTCTGCTGATTAGTTCATTAGAGTGTGTTAATCCTG 285564 Query 17028 GCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATAC 17087 | | || || || || ||||| ||||| || || || | ||||||||||| || | Sbjct 285563 GTAATAACCCACGCTTTTTAAACCAGAATATTGCTGCAAATGCACCAGAAAAGAAAATCC 285504 Query 17088 CCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGC-GTCTTTGTTACG-AAT 17145 |||| || | ||||| || | | || ||| | | | || ||||| | || ||| Sbjct 285503 CCTCAACTGCAGCAAATGCWACCATTCTTTCTCCAAATGAAGCAGTCTTYG--ACTTAAT 285446 Query 17146 CCATTTC-TGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAA 17204 ||| || | ||| | | |||||| || | ||| | || || || || |||| Sbjct 285445 CCACTTAATAGACCATCCAGCCTTTTTACTA-ACACAAGGGAAKGTATCAATAGCATTAA 285387 Query 17205 ATAATTTCT-CTTTT--TCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACA 17261 |||| || | ||||| |||| || || | || || ||||| || | || ||||||| Sbjct 285386 ATAACTTATTCTTTTCTTCCT-TA--TCCTTGATGTAAGTATCAATCAAAAGACTGTACA 285330 Query 17262 TTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTA 17321 |||||||||| || |||||||| | | ||||| || ||||| |||| ||||| || Sbjct 285329 TTTCGGAGTGGATATTCTCCATTGTCACTTGAAAGCCATAAAAACATCTTGCTTCTTGTA 285270 Query 17322 TTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGG 17381 ||| ||||| | |||||| ||| | |||||||| || || || ||||| || | Sbjct 285269 CTTGTACTTCTTGGCAGAATCTTTCAACAAGATTTTCTCCTACAATTCCATCGCTGGCTG 285210 Query 17382 CGAAAAACGCCAATATATGCTTAATGAAATATTTTTC-----GTCCGGTGTAAGAACGCG 17436 | ||||| || | | | || | ||| |||| |||| || ||| | | Sbjct 285209 CAAAAAAGGCTAGCACTT--TTGACAAAAACCCTTTCTCACTGTCC-GTCAAAGTA--CT 285155 Query 17437 CCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGC 17496 |||||| || | |||||| || || ||||||||| ||||||| ||| | ||| Sbjct 285154 CCAGTCATTGATATCTTTACTTAGGTCAACTTCTTCGACTGTCCAAATGGAAGCTAGTGC 285095 Query 17497 CTTTTTATACATATTCCAAATATCATTGTAT--TGTATGGGGAATACAACATATCTATCT 17554 || || || | || ||| | || || || || || || |||| ||| | |||| | Sbjct 285094 TTTCTTGTAGAAATGCCATAAGTC--TGGATGCTGAATTGGAAATAATACAAACCTATGT 285037 Query 17555 AAGGAT--TCCTTTAACACGGGCTCGTC---TTCCATTTTTTGATAGA 17597 |||| | ||| |||| ||||||||| ||||| ||| |||| || Sbjct 285036 --GGATTGTGCTTCAACAAGGGCTCGTCTAGTTCCAATTTATGATTGA 284991 >seq3597 Length=814645 Score = 179 bits (198), Expect = 4e-40 Identities = 550/828 (66%), Gaps = 43/828 (5%) Strand=Plus/Plus Query 16793 AATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGA 16852 ||||| || | |||||||| || ||||| | ||| | | | ||||||||| | ||| Sbjct 810123 AATCTGTCAGACACAAATTCAATGTATTGACCCATAAGGTTACTGTTCATTCCAAGGAGA 810182 Query 16853 CGTACCGGAAGAGCTTCCGTCAAAAA-TCGTTGCTCTATAACAACCGCTTCCTTAATAAT 16911 | ||||| || || ||| | || || || || || ||| ||||| |||||| Sbjct 810183 TGACATGGAAGGGCATCAGTCCAGAACTCCTTT-TCAATGTTAACAGCTTCACAAATAAT 810241 Query 16912 ACTAGC-AACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTA---AACATCAGACATG 16967 || | ||| ||| | || | ||| | | |||| |||| ||||||| |||| Sbjct 810242 -CTCCCTAACCCGTGCTTCAGTKGGTTTRTTGATAAG---TTTAGAGAACATCAAGCATG 810297 Query 16968 CGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGG 17027 | ||||| || || | || || ||||||||||| ||||| ||||| ||| || || | Sbjct 810298 CAAAATCACAGTGAAGACCTTCATCTCTGCTGATTAGTTCATTAGAGTGTGTTAATCCTG 810357 Query 17028 GCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATAC 17087 | | || || || || ||||| ||||| || || || | ||||||||||| || | Sbjct 810358 GTAATAACCCACGCTTTTTAAACCAGAATATTGCTGCAAAAGCACCAGAAAAGAAAATCC 810417 Query 17088 CCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGC-GTCTTTGTTAC-GAAT 17145 |||| || | ||||| || | | || ||| | | | || ||||| | || ||| Sbjct 810418 CCTCAACTGCAGCAAATGCWACCATTCTTTCTCCAAATGAAGCAGTCTTYG--ACTTAAT 810475 Query 17146 CCA-TTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAA 17204 ||| || | ||| | | |||||| | | | ||| | || || || || |||| Sbjct 810476 CCACTTAATAGACCATCCAGCCTTTTTAC-TAACACAAGGGAAGGTATCAATAGCATTAA 810534 Query 17205 ATAA---TTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACA 17261 |||| |||| || ||||| || || | || || ||||| || | || ||||||| Sbjct 810535 ATAACTTATTCTTTTCTTCCT-TA--TCCTTGATGTAAGTATCAATCAAAAGACTGTACA 810591 Query 17262 TTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTA 17321 |||||||||| || |||||||| | | ||||| || ||||| |||| ||||| || Sbjct 810592 TTTCGGAGTGGATATTCTCCATTGTCACTTGAAAGCCATAAAAACATCTTGCTTCTTGTA 810651 Query 17322 TTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGG 17381 ||| ||||| | |||||| ||| | |||||||| || || || ||||| || | Sbjct 810652 CTTGTACTTCTTGGCAGAATCTTTCAACAAGATTTTCTCCTACAATTCCATCGCTGGCTG 810711 Query 17382 CGAAAAACGCCAATATATGCTTAATGAAATATTTTTC-----GTCCGGTGTAAGAACGCG 17436 | ||||| || | | | || | ||| |||| |||| || ||| | | Sbjct 810712 CAAAAAAGGCTAGCACTT--TTGACAAAAACCCTTTCTCACTGTCC-GTCAAAGTA--CT 810766 Query 17437 CCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGC 17496 |||||| || | |||||| || || ||||||||| ||||||| ||| | ||| Sbjct 810767 CCAGTCATTGATATCTTTACTTAGGTCAACTTCTTCGACTGTCCAAATGGAAGCTAGTGC 810826 Query 17497 CTTTTTATACATATTCCAAATATCATTGTAT--TGTATGGGGAATACAACATATCTATCT 17554 || || || | || ||| | || || || || || || |||| ||| | |||| | Sbjct 810827 TTTCTTGTAGAAATGCCATAAGTC--TGGATGCTGAATTGGAAATAATACAAACCTATGT 810884 Query 17555 AAGGAT--TCCTTTAACACGGGCTCGTC---TTCCATTTTTTGATAGA 17597 |||| | ||| |||| ||||||||| ||||| ||| |||| || Sbjct 810885 --GGATTGTGCTTCAACAAGGGCTCGTCTAGTTCCAATTTATGATTGA 810930 >seq3797 Length=117913 Score = 84.2 bits (92), Expect = 2e-11 Identities = 110/150 (73%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 119861 CCCACGTATCCGTTGGGATCCGTTCCATCTAACTCGTATTTATCGTTTAAGTAGATA-CA 119919 || || ||||| ||||| || | ||||| || | ||||| || || ||||| ||| || Sbjct 26862 CCTACATATCCATTGGGGTCAATGCCATCCAATGCATATTTGTCATTAAAGTAAATAGCA 26803 Query 119920 GACGCTTAACGCACTTTCAGGAGTCTCGCTCCATTCCAGTAtttttttAGCCCAGTACAT 119979 ||| || ||| |||| || || | ||||||| || ||||| || ||||| ||||| Sbjct 26802 TCAGCT-AATGCAGTTTCTGGGGTTTTTGTCCATTCAAGGATTTTCTTTGCCCAATACAT 26744 Query 119980 ACGTAAGTATCCATGCATTTTACCTTCACG 120009 |||||| | ||||| | || |||||||| Sbjct 26743 ACGTAAAAAACCATGGAGCTTTCCTTCACG 26714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517517704292160