Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Exaiptasia_20pallida_20[refseq_20GCF_5F001417965.1_202015-10-28] 4,312 sequences; 256,132,296 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1713 141 8e-29 seq3597 138 1e-27 seq3803 122 8e-23 seq4114 89.7 5e-13 >seq1713 Length=288524 Score = 141 bits (156), Expect = 8e-29 Identities = 416/637 (65%), Gaps = 16/637 (3%) Strand=Plus/Plus Query 57528 AATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAA 57587 ||||| | ||| ||||| | ||||| ||| | |||||||| | ||| | | ||||| Sbjct 285032 AATCCACATAGGTTTGTATTATTTCCAATTCAGCATCCAGACTTATGGCATTTCTACAAG 285091 Query 57588 AAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGAT 57647 || ||| ||| || ||||||| ||||||||||| ||||| ||| ||| | | || Sbjct 285092 AAAGCACTAGCTTCCATTTGGACAGTCGAAGAAGTTGACCTAAGTAAAGATATCAATGAC 285151 Query 57648 TGGGATTCCCTCAAAGAATCTGAGAGAAA---TTTTATTAAACACGTGTTGGCGTTTTTC 57704 ||| | | | | || | | |||||| |||| | || | ||| | || ||||| Sbjct 285152 TGGAGTACTTTGACGGA--CAGTGAGAAAGGGTTTTTGTCAA-AAGTGCTAGCCTTTTTT 285208 Query 57705 GCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAA 57764 || || |||||| ||||| || ||| | || |||||||| | |||||||| ||| Sbjct 285209 GCAGCCAGCGATGGAATTGTAGGAGAAAATCTTGTTGAAAGATTCTGCCAAGAAGTACAA 285268 Query 57765 GTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAA 57824 || || || ||||| ||||| || ||||||||| | || || || | || || ||| Sbjct 285269 GTACAAGAAGCAAGATGTTTTTATGGCTTTCAAGTGACAATGGAGAATATCCACTCCGAA 285328 Query 57825 ATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAGAAACGTAGACTGTTC 57884 ||||| || | || ||||| ||| | ||||| || || || || || | || Sbjct 285329 ATGTACAGTCTTTTGATTGATACTTACATCAAGGATAAGGAAGAAAAGAATAAGTTATTT 285388 Query 57885 AACGCGATCGAAACAATGCC-CGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGAT 57943 || || || || || | || | | | | || ||||| | ||||| || || ||||| Sbjct 285389 AATGCTATTGATACMTTCCCTTGTGTTAG-TAAAAAGGCTGGATGGTCTATTAAGTGGAT 285447 Query 57944 AAA----AAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAG 57999 || ||| || || | || | || || | | || || || || || || | Sbjct 285448 TAAGTCRAAG----ACTGCTTCATTTGGAGAAAGAATGGTWGCATTTGCTGCAGTTGAGG 285503 Query 58000 GTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGC 58059 | || |||||||| || ||||| |||||||| ||| | || || || || | | | Sbjct 285504 GGATTTTCTTTTCTGGTGCATTTGCAGCAATATTCTGGTTTAAAAAGCGTGGGTTATTAC 285563 Query 58060 CCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTG 58119 | || | || || || | || | || || ||||| || |||||||| Sbjct 285564 CAGGATTAACACACTCTAATGAACTAATCAGCAGAGAYGAAGGTCTTCACTGTGATTTTG 285623 Query 58120 CGTGCCTAATGTACTCTCACATTGTCAATAAACCGAC 58156 | ||| | |||| |||| | || |||| ||||| || Sbjct 285624 CATGCTTGATGTTCTCTAAACTTATCAAYAAACCMAC 285660 >seq3597 Length=814645 Score = 138 bits (152), Expect = 1e-27 Identities = 416/637 (65%), Gaps = 16/637 (3%) Strand=Plus/Minus Query 57528 AATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAA 57587 ||||| | ||| ||||| | ||||| ||| | |||||||| | ||| | | ||||| Sbjct 810889 AATCCACATAGGTTTGTATTATTTCCAATTCAGCATCCAGACTTATGGCATTTCTACAAG 810830 Query 57588 AAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGAT 57647 || ||| ||| || ||||||| ||||||||||| ||||| ||| ||| | | || Sbjct 810829 AAAGCACTAGCTTCCATTTGGACAGTCGAAGAAGTTGACCTAAGTAAAGATATCAATGAC 810770 Query 57648 TGGGATTCCCTCAAAGAATCTGAGAGAAA---TTTTATTAAACACGTGTTGGCGTTTTTC 57704 ||| | | | | || | | |||||| |||| | || | ||| | || ||||| Sbjct 810769 TGGAGTACTTTGACGGA--CAGTGAGAAAGGGTTTTTGTCAA-AAGTGCTAGCCTTTTTT 810713 Query 57705 GCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAA 57764 || || |||||| ||||| || ||| | || |||||||| | |||||||| ||| Sbjct 810712 GCAGCCAGCGATGGAATTGTAGGAGAAAATCTTGTTGAAAGATTCTGCCAAGAAGTACAA 810653 Query 57765 GTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAA 57824 || || || ||||| ||||| || ||||||||| | || || || | || || ||| Sbjct 810652 GTACAAGAAGCAAGATGTTTTTATGGCTTTCAAGTGACAATGGAGAATATCCACTCCGAA 810593 Query 57825 ATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAGAAACGTAGACTGTTC 57884 ||||| || | || ||||| ||| | ||||| || || || || || | || Sbjct 810592 ATGTACAGTCTTTTGATTGATACTTACATCAAGGATAAGGAAGAAAAGAATAAGTTATTT 810533 Query 57885 AACGCGATCGAAACAATGCC-CGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGAT 57943 || || || || || | || | | | | || ||||| | ||||| || || ||||| Sbjct 810532 AATGCTATTGATACCTTCCCTTGTGTTAG-TAAAAAGGCTGGATGGTCTATTAAGTGGAT 810474 Query 57944 AAA----AAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAG 57999 || ||| || || | || | || || | | || || || || || || | Sbjct 810473 TAAGTCRAAG----ACTGCTTCATTTGGAGAAAGAATGGTWGCATTTGCTGCAGTTGAGG 810418 Query 58000 GTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGC 58059 | || |||||||| || ||||| |||||||| ||| | || || || || | | | Sbjct 810417 GGATTTTCTTTTCTGGTGCTTTTGCAGCAATATTCTGGTTTAAAAAGCGTGGGTTATTAC 810358 Query 58060 CCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTG 58119 | || | || || || | || | || || ||||| || |||||||| Sbjct 810357 CAGGATTAACACACTCTAATGAACTAATCAGCAGAGATGAAGGTCTTCACTGTGATTTTG 810298 Query 58120 CGTGCCTAATGTACTCTCACATTGTCAATAAACCGAC 58156 | ||| | |||| |||| | || |||| ||||| || Sbjct 810297 CATGCTTGATGTTCTCTAAACTTATCAAYAAACCMAC 810261 >seq3803 Length=782546 Score = 122 bits (134), Expect = 8e-23 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| |||||| |||| || ||||| || ||| | || || ||||| | Sbjct 742523 ATGCAGATTTTCGTCAAGACTTTGACGGGAAAAACCATTACCCTTGAGGTCGAACCAAGC 742582 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | || ||| || ||| | | |||| |||||| | || || ||||| Sbjct 742583 GACACCATTGAGAATGTGAAAACAAAGATTCAAG-ACAAAGAAGGCATCCCCCCTGACCA 742641 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 || | || ||||| ||||| ||||| | ||||| ||| ||||||| || || Sbjct 742642 ACAAAGRCTCATATTYGCTGGAAAACAACTTGAAGATGGCCGTACTTTGAGCGACTACAA 742701 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || ||||| || ||||||||||| ||||| ||| |||| || || Sbjct 742702 CATCCAGAAAGAGTCCACTCTTCATCTTGTACTGAGATTGAGAGGAGG 742749 >seq4114 Length=678496 Score = 89.7 bits (98), Expect = 5e-13 Identities = 94/121 (78%), Gaps = 2/121 (2%) Strand=Plus/Minus Query 31301 CCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTA-T 31359 || || ||||| |||||||| || || ||||| ||||| | ||||| | | || | | Sbjct 195572 CCACCAGACCAACAGCGTCTCATTTTTGCTGGAAAACAACTTGAAGA-TGGACGAACACT 195514 Query 31360 GAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| |||||||||||||| |||||||| ||||| ||||| || || ||||| || || || Sbjct 195513 GAGTGATTATAACATTCAGAAAGAATCCACTCTACATCTTGTGCTCAGACTTAGAGGKGG 195454 Query 31420 T 31420 | Sbjct 195453 T 195453 Score = 87.8 bits (96), Expect = 2e-12 Identities = 94/122 (77%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 31301 CCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTA-T 31359 || || ||||| |||||||| || || ||||| ||||| | ||||| | | || | | Sbjct 197819 CCACCAGACCAACAGCGTCTCATTTTTGCTGGAAAACAACTTGAAGA-TGGACGAACACT 197761 Query 31360 GAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| |||||||||||||| |||||||| ||||| ||||| || || ||||| || || | Sbjct 197760 GAGTGATTATAACATTCAGAAAGAATCCACTCTACATCTTGTGCTCAGACTTAGAGGNGA 197701 Query 31420 TA 31421 || Sbjct 197700 TA 197699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445742373191040