Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Exaiptasia_20pallida_20[refseq_20GCF_5F001417965.1_202015-10-28] 4,312 sequences; 256,132,296 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq1713 251 7e-62 seq3597 242 3e-59 seq25 105 6e-18 >seq1713 Length=288524 Score = 251 bits (278), Expect = 7e-62 Identities = 551/821 (67%), Gaps = 12/821 (1%) Strand=Plus/Minus Query 11334 CCATCTTT-TGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGAT 11392 |||| ||| ||||| || ||||| || || || |||| ||| ||||| ||||| Sbjct 285924 CCATTTTTCTGATACTCTGCTACTCGYTTCTCAAAGAAGTTAGCCTTTCCTTCAAGTGAA 285865 Query 11393 ATATACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCT 11452 || | |||||||| |||| || || | | | | || ||| | |||| | | Sbjct 285864 ATGTTTTCCATAAATGTAAATGGGTTTCCTGTGTGGTACACCTTTGTAAAACCAAGGGCA 285805 Query 11453 GTTAATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCT 11512 | ||||| || | || ||||| || || ||| ||| | || ||||| || Sbjct 285804 ACAAGCAATCTGTCAGACACAAATTCAATGTATTGACCCATAAGGTTACTGTTCATTCCA 285745 Query 11513 ATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATG 11572 | |||| |||| ||| | ||| | ||||||||||| || ||||| || ||| Sbjct 285744 AGGAGATGACATGGAAGGGCATCAGTCCAGAACTCCTTTTCAATGTTAACAGCTTCACAA 285685 Query 11573 ATTATCGACGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTA---AACATTAAA 11629 || ||| | | | | | | || ||| | | |||| ||||| ||||| || Sbjct 285684 ATAATCTCCCTAACCCGTGCTTCAGTKGGTTTRT-TGATAA--GTTTAGAGAACATCAAG 285628 Query 11630 CACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAAT 11689 || ||||||||||| || | |||||| ||||| || |||||||||||||| ||||||| Sbjct 285627 CATGCAAAATCACAGTGAAGACCTTCRTCTCTGCTGATTAGTTCATTAGAGTGTGTTAAT 285568 Query 11690 CCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAAT 11749 || || | || || || ||||| | ||| ||||| || ||||||| |||||||||||| Sbjct 285567 CCTGGTAATAACCCACGCTTTTTAAACCAGAATATTGCTGCAAATGCACCAGAAAAGAAA 285508 Query 11750 ATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATAT--ACCTTGTTGCTAGAT- 11806 || ||||| || || |||||||| || | |||||||||| || | | | | | Sbjct 285507 ATCCCCTCAACTGCAGCAAATGCWACCATTCTTTCTCCAAATGAAGCAGTCTTYGACTTA 285448 Query 11807 ATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTA 11866 ||||| || | | ||| |||| || || | || || | || || ||||| ||| Sbjct 285447 ATCCACTTAATAGACCATCCAGCCTTTTTACTAACACAAGGGAAKGTATCAATAGCATTA 285388 Query 11867 AATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATT 11926 ||||| | | |||||| ||||| | | || ||||| || || | ||| |||||| Sbjct 285387 AATAACTTATTCTTTTCTTCCTTATCCTTGATGTAAGTATCAATCAAAAGACTGTACATT 285328 Query 11927 TCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTC-TGAACA 11985 || || || ||||| ||||| | | |||||| ||||| ||||||| ||| || || || Sbjct 285327 TCGGAGTGGATATTCTCCATTGTCACTTGAAAGCCATAAAAACATCTTGCTTCTTGTAC- 285269 Query 11986 CTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGC 12045 ||||| || | |||||||| | | ||| || |||||| ||||| || | ||| Sbjct 285268 TTGTACTTCTTGGCAGAATCTTTCAACAAGATTTTCTCCTACAATTCCATCGCTGGCTGC 285209 Query 12046 AAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATC 12105 |||||| ||||| | | | | ||| ||| || | || || || ||| || Sbjct 285208 AAAAAAGGCTAGCACTTTTGACAAAAACCCTTTCTCACTGTCCGTCAAAGTACTCCAGTC 285149 Query 12106 ATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAA 12146 || | |||||| || || |||||||| || ||||||| Sbjct 285148 ATTGATATCTTTACTTAGGTCAACTTCTTCGACTGTCCAAA 285108 >seq3597 Length=814645 Score = 242 bits (268), Expect = 3e-59 Identities = 550/821 (67%), Gaps = 12/821 (1%) Strand=Plus/Plus Query 11334 CCATCTTT-TGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGAT 11392 |||| ||| ||||| || ||||| || || || |||| ||| ||||| ||||| Sbjct 809997 CCATTTTTCTGATACTCTGCTACTCGYTTCTCAAAGAAGTTAGCCTTTCCTTCAAGTGAA 810056 Query 11393 ATATACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCT 11452 || | |||||||| |||| || || | | | | || ||| | |||| | | Sbjct 810057 ATGTTTTCCATAAATGTAAATGGGTTTCCTGTGTGGTACACCTTTGTAAAACCAAGGGCA 810116 Query 11453 GTTAATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCT 11512 | ||||| || | || ||||| || || ||| ||| | || ||||| || Sbjct 810117 ACAAGCAATCTGTCAGACACAAATTCAATGTATTGACCCATAAGGTTACTGTTCATTCCA 810176 Query 11513 ATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATG 11572 | |||| |||| ||| | ||| | ||||||||||| || ||||| || ||| Sbjct 810177 AGGAGATGACATGGAAGGGCATCAGTCCAGAACTCCTTTTCAATGTTAACAGCTTCACAA 810236 Query 11573 ATTATCGACGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTA---AACATTAAA 11629 || ||| | | | | | | || ||| | | |||| ||||| ||||| || Sbjct 810237 ATAATCTCCCTAACCCGTGCTTCAGTKGGTTTRT-TGATAA--GTTTAGAGAACATCAAG 810293 Query 11630 CACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAAT 11689 || ||||||||||| || | |||||| ||||| || |||||||||||||| ||||||| Sbjct 810294 CATGCAAAATCACAGTGAAGACCTTCATCTCTGCTGATTAGTTCATTAGAGTGTGTTAAT 810353 Query 11690 CCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAAT 11749 || || | || || || ||||| | ||| ||||| || ||||| | |||||||||||| Sbjct 810354 CCTGGTAATAACCCACGCTTTTTAAACCAGAATATTGCTGCAAAAGCACCAGAAAAGAAA 810413 Query 11750 ATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATAT--ACCTTGTTGCTAGAT- 11806 || ||||| || || |||||||| || | |||||||||| || | | | | | Sbjct 810414 ATCCCCTCAACTGCAGCAAATGCWACCATTCTTTCTCCAAATGAAGCAGTCTTYGACTTA 810473 Query 11807 ATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTA 11866 ||||| || | | ||| |||| || || | || || | || || ||||| ||| Sbjct 810474 ATCCACTTAATAGACCATCCAGCCTTTTTACTAACACAAGGGAAGGTATCAATAGCATTA 810533 Query 11867 AATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATT 11926 ||||| | | |||||| ||||| | | || ||||| || || | ||| |||||| Sbjct 810534 AATAACTTATTCTTTTCTTCCTTATCCTTGATGTAAGTATCAATCAAAAGACTGTACATT 810593 Query 11927 TCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTC-TGAACA 11985 || || || ||||| ||||| | | |||||| ||||| ||||||| ||| || || || Sbjct 810594 TCGGAGTGGATATTCTCCATTGTCACTTGAAAGCCATAAAAACATCTTGCTTCTTGTAC- 810652 Query 11986 CTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGC 12045 ||||| || | |||||||| | | ||| || |||||| ||||| || | ||| Sbjct 810653 TTGTACTTCTTGGCAGAATCTTTCAACAAGATTTTCTCCTACAATTCCATCGCTGGCTGC 810712 Query 12046 AAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATC 12105 |||||| ||||| | | | | ||| ||| || | || || || ||| || Sbjct 810713 AAAAAAGGCTAGCACTTTTGACAAAAACCCTTTCTCACTGTCCGTCAAAGTACTCCAGTC 810772 Query 12106 ATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAA 12146 || | |||||| || || |||||||| || ||||||| Sbjct 810773 ATTGATATCTTTACTTAGGTCAACTTCTTCGACTGTCCAAA 810813 >seq25 Length=601041 Score = 105 bits (116), Expect = 6e-18 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| |||||||| | |||||||| | || || ||||| || || ||||||||| Sbjct 253293 ACCTGAAACTCTCCAGACAGAACTCTTCTAGAGTAGATGTTGCTGGTGTAAGGTTCAATG 253234 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 || |||||||||| | ||||| | ||| || ||||| |||||||| || | |||||| Sbjct 253233 GATTCATTATTACCAAGAATTTGTGCTGTTGAAGCAGTTGGCATTGGAGCAAGAAGAAGG 253174 Query 37258 CTATTTCT 37265 || || || Sbjct 253173 CTGTTCCT 253166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468499546513280