Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Exaiptasia_20pallida_20[refseq_20GCF_5F001417965.1_202015-10-28] 4,312 sequences; 256,132,296 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq1713 280 1e-70 seq3597 277 2e-69 seq628 84.2 2e-11 >seq1713 Length=288524 Score = 280 bits (310), Expect = 1e-70 Identities = 506/733 (69%), Gaps = 17/733 (2%) Strand=Plus/Minus Query 13576 CCATTTTT-TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGAT 13634 |||||||| ||||| || |||| || ||||||||||||| || ||||| ||||| Sbjct 285924 CCATTTTTCTGATACTCTGCTACTCGYTTCTCAAAGAAGTTAGCCTTTCCTTCAAGTGAA 285865 Query 13635 ATATTTTCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCT 13694 || ||||||||||| |||||| ||| || |||| || | |||| || | Sbjct 285864 ATGTTTTCCATAAATGTAAATGGGTTTCCTGTGTGGTACACCTTTGTAAAACCAAGGGCA 285805 Query 13695 AATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCT 13754 | || ||||| |||| | ||| ||||| |||||| ||| | | || ||||| || Sbjct 285804 ACAAGCAATCTGTCAGACACAAATTCAATGTATTGACCCATAAGGTTACTGTTCATTCCA 285745 Query 13755 ATTAGTTTTACA-GGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTT 13813 | || | ||| |||| || || | || || ||||| || ||||| || Sbjct 285744 AGGAGATG-ACATGGAAGGGCATCAGTCCAGAACTCCTTTTCAATGTTAACAGCTTCACA 285686 Query 13814 TATAATAATTGTAATAATC--TCATTAGAAGGAGGATATTTTAGATGTTTA---AAAATT 13868 |||||| ||| | | || || || | || | | ||||| || || Sbjct 285685 ---AATAATCTCCCTAACCCGTGCTTC--AGTKGGTTTRTTGATAAGTTTAGAGAACATC 285631 Query 13869 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13928 || || ||||||||||| ||||| || || ||||| || || ||||| || || |||| Sbjct 285630 AAGCATGCAAAATCACAGTGAAGACCTTCRTCTCTGCTGATTAGTTCATTAGAGTGTGTT 285571 Query 13929 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAG 13988 |||||||| | || || || ||||| ||||| |||||||| ||||||| || |||||| Sbjct 285570 AATCCTGGTAATAACCCACGCTTTTTAAACCAGAATATTGCTGCAAATGCACCAGAAAAG 285511 Query 13989 AATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTC 14048 || || ||||||||||||||||| || | | || ||||||||| || || | || | Sbjct 285510 AAAATCCCCTCAACTGCAGCAAATGCWACCATTCTTTCTCCAAATGAAGCAGTCTTYGAC 285451 Query 14049 GATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCA 14108 ||||| || ||| |||| ||| ||||| ||| | || | || ||||||||| Sbjct 285450 TTAATCCACTTAATAGACCATCCAGCCTTTTTACTAACACAAGGGAAKGTATCAATAGCA 285391 Query 14109 TTAAATAAATATTCCTTCTCTT--TAGTACTTGAAATGTATGTATCAATAAGTAAGCTAT 14166 |||||||| | | ||| |||| | | |||| ||||| |||||||| | | || | Sbjct 285390 TTAAATAACTTATTCTTTTCTTCCTTATCCTTG--ATGTAAGTATCAATCAAAAGACTGT 285333 Query 14167 ACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCG 14226 ||||||| ||||| || || ||||| | | ||||| |||||||| ||||| ||||| Sbjct 285332 ACATTTCGGAGTGGATATTCTCCATTGTCACTTGAAAGCCATAAAAACATCTTGCTTCTT 285273 Query 14227 ACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAG 14286 ||||||||| | | |||||||| | | |||||| || || ||||| || | Sbjct 285272 GTACTTGTACTTCTTGGCAGAATCTTTCAACAAGATTTTCTCCTACAATTCCATCGCTGG 285213 Query 14287 CTGCAAAAAATGC 14299 |||||||||| || Sbjct 285212 CTGCAAAAAAGGC 285200 >seq3597 Length=814645 Score = 277 bits (306), Expect = 2e-69 Identities = 506/733 (69%), Gaps = 17/733 (2%) Strand=Plus/Plus Query 13576 CCATTTTT-TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGAT 13634 |||||||| ||||| || |||| || ||||||||||||| || ||||| ||||| Sbjct 809997 CCATTTTTCTGATACTCTGCTACTCGYTTCTCAAAGAAGTTAGCCTTTCCTTCAAGTGAA 810056 Query 13635 ATATTTTCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCT 13694 || ||||||||||| |||||| ||| || |||| || | |||| || | Sbjct 810057 ATGTTTTCCATAAATGTAAATGGGTTTCCTGTGTGGTACACCTTTGTAAAACCAAGGGCA 810116 Query 13695 AATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCT 13754 | || ||||| |||| | ||| ||||| |||||| ||| | | || ||||| || Sbjct 810117 ACAAGCAATCTGTCAGACACAAATTCAATGTATTGACCCATAAGGTTACTGTTCATTCCA 810176 Query 13755 ATTAGTTTTACA-GGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTT 13813 | || | ||| |||| || || | || || ||||| || ||||| || Sbjct 810177 AGGAGATG-ACATGGAAGGGCATCAGTCCAGAACTCCTTTTCAATGTTAACAGCTTCACA 810235 Query 13814 TATAATAATTGTAATAATC--TCATTAGAAGGAGGATATTTTAGATGTTTA---AAAATT 13868 |||||| ||| | | || || || | || | | ||||| || || Sbjct 810236 ---AATAATCTCCCTAACCCGTGCTTC--AGTKGGTTTRTTGATAAGTTTAGAGAACATC 810290 Query 13869 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13928 || || ||||||||||| ||||| || |||||||| || || ||||| || || |||| Sbjct 810291 AAGCATGCAAAATCACAGTGAAGACCTTCATCTCTGCTGATTAGTTCATTAGAGTGTGTT 810350 Query 13929 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAG 13988 |||||||| | || || || ||||| ||||| |||||||| ||||| | || |||||| Sbjct 810351 AATCCTGGTAATAACCCACGCTTTTTAAACCAGAATATTGCTGCAAAAGCACCAGAAAAG 810410 Query 13989 AATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTC 14048 || || ||||||||||||||||| || | | || ||||||||| || || | || | Sbjct 810411 AAAATCCCCTCAACTGCAGCAAATGCWACCATTCTTTCTCCAAATGAAGCAGTCTTYGAC 810470 Query 14049 GATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCA 14108 ||||| || ||| |||| ||| ||||| ||| | || | || ||||||||| Sbjct 810471 TTAATCCACTTAATAGACCATCCAGCCTTTTTACTAACACAAGGGAAGGTATCAATAGCA 810530 Query 14109 TTAAATAAATATTCCTTCTCTT--TAGTACTTGAAATGTATGTATCAATAAGTAAGCTAT 14166 |||||||| | | ||| |||| | | |||| ||||| |||||||| | | || | Sbjct 810531 TTAAATAACTTATTCTTTTCTTCCTTATCCTTG--ATGTAAGTATCAATCAAAAGACTGT 810588 Query 14167 ACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCG 14226 ||||||| ||||| || || ||||| | | ||||| |||||||| ||||| ||||| Sbjct 810589 ACATTTCGGAGTGGATATTCTCCATTGTCACTTGAAAGCCATAAAAACATCTTGCTTCTT 810648 Query 14227 ACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAG 14286 ||||||||| | | |||||||| | | |||||| || || ||||| || | Sbjct 810649 GTACTTGTACTTCTTGGCAGAATCTTTCAACAAGATTTTCTCCTACAATTCCATCGCTGG 810708 Query 14287 CTGCAAAAAATGC 14299 |||||||||| || Sbjct 810709 CTGCAAAAAAGGC 810721 >seq628 Length=1115932 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 13557 TCTTTGTTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTA 13616 |||||||| || || || | || |||||||| | |||| ||||||||||||||| Sbjct 723454 TCTTTGTTGCCCATWACTCCACTCTTCTGATATTCGCCTACTCGTTTTTCAAAGAAGTTG 723513 Query 13617 GTTTTACCTTCCAGTGATATATTTTCCATAAAATCAAATGGATTT 13661 || || ||||| || || || || ||||| |||||||| |||||| Sbjct 723514 GTCTTTCCTTCAAGAGAGATGTTCTCCATGAAATCAAAAGGATTT 723558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479702142660800