Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Exaiptasia_20pallida_20[refseq_20GCF_5F001417965.1_202015-10-28] 4,312 sequences; 256,132,296 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq3597 107 3e-18 seq1713 104 4e-17 seq3803 100 5e-16 >seq3597 Length=814645 Score = 107 bits (118), Expect = 3e-18 Identities = 174/250 (70%), Gaps = 4/250 (2%) Strand=Plus/Plus Query 39123 AAACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTT 39182 || ||||||||||| || | |||||| || || || | ||||||| ||| Sbjct 810291 AAGCATGCAAAATCACAGTGAAGACCTTCATCTCTGCTGATTAGTTCATTAGAGTGTGTT 810350 Query 39183 AATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAG 39242 |||||||| | ||| || | |||||||| ||| ||||||| ||||||| || ||||||| Sbjct 810351 AATCCTGGTAATAACCCACGCTTTTTAAACCAGAATATTGCTGCAAAAGCACCAGAAAAG 810410 Query 39243 AATATACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCT 39302 || || ||||| || |||||||| | |||||| |||||| || || || | Sbjct 810411 AAAATCCCCTCAACTGCAGCAAATGCWACCATTCTTTCTCCAA--ATGAAGCAGTCTTYG 810468 Query 39303 A--AAATCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAG 39360 | |||||| || || | ||| | || ||||| | | | |||| | | || |||| Sbjct 810469 ACTTAATCCACTTAATAGACCATCCAGCCTTTTTACTAACACAAGGGAAGGTATCAATAG 810528 Query 39361 CTTTAAATAA 39370 | |||||||| Sbjct 810529 CATTAAATAA 810538 >seq1713 Length=288524 Score = 104 bits (114), Expect = 4e-17 Identities = 173/250 (69%), Gaps = 4/250 (2%) Strand=Plus/Minus Query 39123 AAACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTT 39182 || ||||||||||| || | |||||| || || || | ||||||| ||| Sbjct 285630 AAGCATGCAAAATCACAGTGAAGACCTTCRTCTCTGCTGATTAGTTCATTAGAGTGTGTT 285571 Query 39183 AATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAG 39242 |||||||| | ||| || | |||||||| ||| ||||||| |||||| || ||||||| Sbjct 285570 AATCCTGGTAATAACCCACGCTTTTTAAACCAGAATATTGCTGCAAATGCACCAGAAAAG 285511 Query 39243 AATATACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCT 39302 || || ||||| || |||||||| | |||||| |||||| || || || | Sbjct 285510 AAAATCCCCTCAACTGCAGCAAATGCWACCATTCTTTCTCCAA--ATGAAGCAGTCTTYG 285453 Query 39303 A--AAATCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAG 39360 | |||||| || || | ||| | || ||||| | | | |||| | | || |||| Sbjct 285452 ACTTAATCCACTTAATAGACCATCCAGCCTTTTTACTAACACAAGGGAAKGTATCAATAG 285393 Query 39361 CTTTAAATAA 39370 | |||||||| Sbjct 285392 CATTAAATAA 285383 >seq3803 Length=782546 Score = 100 bits (110), Expect = 5e-16 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || ||||| | || | ||| | ||| | ||| | |||||| || || || || Sbjct 742752 ATTCCTCCTCTCAATCTCAGTACAAGATGAAGAGTGGACTCTTTCTGGATGTTGTAGTCG 742693 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 |||| || | || || | |||||| ||||| || || | || ||||||||||| Sbjct 742692 CTCAAAGTACGGCCATCTTCAAGTTGTTTTCCAGCRAATATGAGYCTTTGTTGGTCAGGG 742633 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| ||||| || || |||| ||||| || || || | ||| Sbjct 742632 GGGATGCCTTCTTTGTCTTGAATCTTTGTTTTCACATTCTCAATGGTGTCGCTTGGTTCG 742573 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || || ||||||||||| || || || || || | ||| ||||||||| Sbjct 742572 ACCTCAAGGGTAATGGTTTTTCCCGTCAAAGTCTTGACGAAAATCTGCATT 742522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905087213169600